Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq241 132 9e-26 seq36 129 1e-24 seq315 125 1e-23 seq3982 122 2e-22 seq4683 120 6e-22 seq130 89.7 1e-12 >seq241 Length=39592 Score = 132 bits (146), Expect = 9e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || |||||||| ||||||||||| || || Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17924 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| |||||||||||||| || ||||| ||||| || | Sbjct 17925 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17984 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 17985 GTCTTAACAAAAATTTGCATT 18005 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || |||||||| ||||||||||| || || Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| |||||||||||||| || ||||| ||||| || | Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 18829 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 18830 GTCTTAACGAAAATTTGCATT 18850 Score = 127 bits (140), Expect = 4e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||||||||||| || || ||||| || ||||||||||| | Sbjct 21313 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 21372 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| || || ||||| | || ||||| || ||||||||| Sbjct 21373 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 21432 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 21433 GTTTTCACAAATATCTGCAT 21452 Score = 127 bits (140), Expect = 4e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||||||||||| || || ||||| || ||||||||||| | Sbjct 22595 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 22654 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| || || ||||| | || ||||| || ||||||||| Sbjct 22655 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 22714 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 22715 GTTTTCACAAATATCTGCAT 22734 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | ||||||||| || || ||||| || ||||||||||| Sbjct 19549 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 19608 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 ||| |||| |||||||| || |||||| |||||||||||||||||||| || || || Sbjct 19609 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19668 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| || || || |||||| Sbjct 19669 GTAAGGGTCTTAACGAAAATTTGCATT 19695 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | ||||||||| || || |||||||||||||| || || Sbjct 20673 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 20732 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || |||| ||||||||||| |||||| |||||||||||||||||||| || || || Sbjct 20733 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 20792 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| || || || |||||| Sbjct 20793 GTAAGGGTCTTAACGAAAATTTGCATT 20819 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | |||||||||||||| ||||| ||||||||||||||||| || Sbjct 17582 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17641 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||| |||||| ||||| |||||||| || || || || || || | Sbjct 17642 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17701 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 17702 GTCTTAACAAAAATTTGCATT 17722 Score = 123 bits (136), Expect = 5e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | ||||||||| || || ||||| || ||||||||||| ||| || Sbjct 20117 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCCT 20176 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || |||||| |||||||||||||||||||| || || || || | Sbjct 20177 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 20236 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 20237 GTCTTAACGAAAATTTGCATT 20257 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | |||||||| || || ||||| || ||||||||||| Sbjct 18421 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 18480 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 ||| |||| |||||||| || |||||| ||||||||||| || || ||||| ||||| Sbjct 18481 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCG 18540 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| ||||| || |||||| Sbjct 18541 GTAAGAGTCTTAACAAAAATTTGCATT 18567 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | ||||||||| || || |||||||||||||| || || || || Sbjct 19275 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19334 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| |||||||||||||| || ||||| ||||| || | Sbjct 19335 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19394 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 19395 GTCTTAACGAAAATTTGCATT 19415 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || |||||||||||||| || || || Sbjct 19834 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 19893 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||| || || |||||| |||||||||||||| || ||||| ||||| || Sbjct 19894 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 19953 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 19954 AGAGTCTTAACGAAAATTTGCATT 19977 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || |||||||||||||| || || || Sbjct 20396 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 20455 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||| || || |||||| |||||||||||||| || ||||| ||||| || Sbjct 20456 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 20515 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 20516 AGAGTCTTAACGAAAATTTGCATT 20539 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || |||||||||||||| || || || || Sbjct 27018 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26959 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| ||||||||||| || || ||||| ||||| || | Sbjct 26958 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26899 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 26898 GTCTTAACGAAAATTTGCATT 26878 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || || ||||||||||| || || || Sbjct 18989 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 19048 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||| ||||| || || |||||| ||||||||||| || || ||||| ||||| || Sbjct 19049 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 19108 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| || |||||| Sbjct 19109 AGAGTCTTAACAAAAATTTGCATT 19132 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | ||||||||| || || ||||| || ||||| ||||| || Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||||||||| || || ||||| ||||||| ||| || || || || ||| Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||||||||||||| Sbjct 23044 AGAGTTTTCACAAATATCTGCATT 23067 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | ||||||||| || || ||||| || ||||| ||||| || Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||||||||| || || ||||| ||||||| ||| || || || || || Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||||||||||||| Sbjct 21762 AGAGTTTTGACAAATATCTGCATT 21785 Score = 105 bits (116), Expect = 1e-17 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || || ||||||||||| || || || Sbjct 18144 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 18203 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCG-TCTTGCCTGT 82786 |||| ||||| || || |||||| ||||||||||| || || |||| | ||||| || Sbjct 18204 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTTGCCGGT 18263 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| || |||||| Sbjct 18264 AAGAGTCTTAACAAAAATTTGCATT 18288 >seq36 Length=323583 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | || ||| ||||| || || || ||||||||||||||||| || | Sbjct 41256 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41315 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||||||||||||| || ||||||||||| || || || || || || || Sbjct 41316 TTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41375 Query 82791 GTCTTTACAAATATCTGCATT 82811 || || ||||| ||||||||| Sbjct 41376 GTTTTCACAAAAATCTGCATT 41396 Score = 127 bits (140), Expect = 4e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||||||||||| || || ||||| || ||||||||||| | Sbjct 17967 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 17908 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| || || ||||| | || ||||| || ||||||||| Sbjct 17907 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 17848 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 17847 GTTTTCACAAATATCTGCAT 17828 Score = 122 bits (134), Expect = 2e-22 Identities = 113/141 (80%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| || Sbjct 41542 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTTACT 41600 Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 ||| ||||||||||||||||| || ||||||||||| || || || || || || || Sbjct 41601 TTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 41660 Query 82790 CGTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 41661 TGTTTTCACAAAAATCTGCAT 41681 Score = 116 bits (128), Expect = 7e-21 Identities = 118/151 (78%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || || |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT- 42021 Query 82725 TTTGCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783 ||| ||||| |||||||| || || || ||||| ||||| | ||||| || || || Sbjct 42022 TTTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCC 42081 Query 82784 TGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | ||||| || ||||||||||| ||| Sbjct 42082 AGTAAGTGTCTTCACGAATATCTGCATAATT 42112 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | ||||||||| || || ||||| || ||||| ||||| || Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||||||||| || || ||||| ||||||| ||| || || || || ||| Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||||||||||||| Sbjct 17518 AGAGTTTTCACAAATATCTGCATT 17495 >seq315 Length=12309 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | |||||||| || || ||||| || ||||||||||| ||| Sbjct 7147 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7206 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||| |||||||| || |||||| |||||||||||||||||||| || || || || Sbjct 7207 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 7266 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| || |||||| Sbjct 7267 AGAGTCTTAACAAAAATTTGCATT 7290 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | |||||||| || || ||||| || ||||||||||| ||| Sbjct 7713 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7772 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||| |||||||| || |||||| |||||||||||||||||||| || || || || Sbjct 7773 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 7832 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| || |||||| Sbjct 7833 AGAGTCTTAACAAAAATTTGCATT 7856 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | ||||||||| || || ||||| || ||||||||||| Sbjct 11307 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 11366 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 ||| |||| |||||||| || |||||| |||||||||||||||||||| || || || Sbjct 11367 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 11426 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| || || || |||||| Sbjct 11427 GTAAGGGTCTTAACGAAAATTTGCATT 11453 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | ||||||||| || || ||||| || ||||||||||| Sbjct 12149 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 12208 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 ||| |||| |||||||| || |||||| |||||||||||||||||||| || || || Sbjct 12209 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 12268 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| || || || |||||| Sbjct 12269 GTAAGGGTCTTAACGAAAATTTGCATT 12295 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | ||||||||| || || |||||||||||||| || || Sbjct 11869 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 11928 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || |||| ||||||||||| |||||| ||||| |||||||| || || || ||||| Sbjct 11929 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCG 11988 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| ||||| || |||||| Sbjct 11989 GTGAGGGTCTTAACAAAAATTTGCATT 12015 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || ||||| || ||||||||||| || || Sbjct 7434 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 7493 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| ||||||||||| || || ||||| ||||| || | Sbjct 7494 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 7553 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 7554 GTCTTAACGAAAATTTGCATT 7574 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || |||||||||||||| || || || Sbjct 11030 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11089 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||| || || |||||| |||||||||||||| || ||||| ||||| || Sbjct 11090 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11149 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 11150 AGAGTCTTAACGAAAATTTGCATT 11173 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || |||||||||||||| || || || Sbjct 11592 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11651 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||| || || |||||| |||||||||||||| || ||||| ||||| || Sbjct 11652 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11711 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 11712 AGAGTCTTAACGAAAATTTGCATT 11735 Score = 113 bits (124), Expect = 9e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || ||||| || ||||||||||| ||||| Sbjct 6870 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAAT-TTTGCC 6928 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || |||||| ||||||||||| || || ||||| ||||| || | Sbjct 6929 TT-ACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6987 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 6988 GTCTTAACGAAAATTTGCATT 7008 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | ||||||||| || || ||||| || ||||| ||||| || Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||||||||| || || ||||| ||||||| ||| || || || || ||| Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||||||||||||| Sbjct 9204 AGAGTTTTGACAAATATCTGCATT 9227 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || ||||| || ||||||||||| || || Sbjct 8000 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 8059 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTC 82765 |||||||| || || |||||| ||||||||||| Sbjct 8060 TTTACATTCTCTATTGTATCAGATGGTTCTACTTC 8094 >seq3982 Length=267 Score = 122 bits (134), Expect = 2e-22 Identities = 113/141 (80%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| || Sbjct 140 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTTACT 82 Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 ||| ||||||||||||||||| || ||||||||||| || || || || || || || Sbjct 81 TTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 22 Query 82790 CGTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 21 TGTTTTCACAAAAATCTGCAT 1 >seq4683 Length=240 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | ||||||||| || || |||||||||||||| || || || || Sbjct 3 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 62 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| |||||||||||||| || ||||| ||||| || | Sbjct 63 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 122 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 123 GTCTTAACGAAAATTTGCATT 143 >seq130 Length=122102 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || ||||| || || || ||||| | ||| |||||| ||| || |||||| Sbjct 70989 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 70930 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| | || || |||||||| ||||| Sbjct 70929 AAAGTGATGGTCTTTCCTGTAAGGGTTTTCACAAATATTTGCAT 70886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981754841789928