Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq131 86.0 8e-12 seq69 86.0 8e-12 seq21 86.0 8e-12 seq14 86.0 8e-12 >seq131 Length=122001 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 49170 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 49229 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 49230 CCGGCCGGGGAG 49241 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 49867 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 49926 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 49927 CCGGCCGGGGAG 49938 >seq69 Length=204402 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 58224 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 58283 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 58284 CCGGCCGGGGAG 58295 >seq21 Length=411193 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 95778 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 95837 Query 8718 CCCGACGAGGAGCAG 8732 || | || |||| || Sbjct 95838 CCGGCCGGGGAGAAG 95852 >seq14 Length=463735 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| |||||||||| ||||| | |||| |||| ||||||||||| Sbjct 75230 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 75289 Query 8718 CCCGACGAGGAG 8729 || | || |||| Sbjct 75290 CCGGCCGGGGAG 75301 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| |||||||| Sbjct 75227 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 75286 Query 11786 TTCCCCGACGAGGAG 11800 ||||| | || |||| Sbjct 75287 TTCCCGGCCGGGGAG 75301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652797860458880