Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq118 102 2e-16 >seq118 Length=130256 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 112644 GCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGAT 112703 ||| || | ||||| || ||| |||||||||| ||||| ||||||||||| || ||| Sbjct 95070 GCAGAAAAGTCTAACAAACGTCATCGACCAATTGGTATTGGTGTACAAGGATTGGCGGAT 95011 Query 112704 GTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAAAAG 112763 | ||||| |||||||| ||| ||||| || || |||| ||| || ||| | || Sbjct 95010 GCTTTTATTTTGATGCGATATCCGTTTGAATCCGAAGAAGCTAGATTGTTGAATAAGAAA 94951 Query 112764 ATTTTCGAAACAATCTATTTCGCTGC 112789 ||||| ||||| ||||||| ||||| Sbjct 94950 ATTTTTGAAACCATCTATTATGCTGC 94925 Score = 93.3 bits (102), Expect = 1e-13 Identities = 172/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| | ||||| | ||| | ||||||||||| |||| |||||||| || Sbjct 95872 AGAGACCTGGGGCGTTTGCGGTATATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 95813 Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860 | || || |||| | || ||| | |||||| | |||| || ||||| |||||||| Sbjct 95812 TTGA--CGCGAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGC 95755 Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920 | ||||| | ||| |||||||||| || || ||| | || ||||| || || Sbjct 95754 CCTCTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 95695 Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 ||| |||||| | |||||| | | ||| | | || | ||||||||| | | || Sbjct 95694 GTGCCCTCATGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 95635 Query 110981 CGAAAAATA 110989 |||||| || Sbjct 95634 CGAAAAGTA 95626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186725334863672