Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq118 102 2e-16
>seq118
Length=130256
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 112644 GCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGAT 112703
||| || | ||||| || ||| |||||||||| ||||| ||||||||||| || |||
Sbjct 95070 GCAGAAAAGTCTAACAAACGTCATCGACCAATTGGTATTGGTGTACAAGGATTGGCGGAT 95011
Query 112704 GTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAAAAG 112763
| ||||| |||||||| ||| ||||| || || |||| ||| || ||| | ||
Sbjct 95010 GCTTTTATTTTGATGCGATATCCGTTTGAATCCGAAGAAGCTAGATTGTTGAATAAGAAA 94951
Query 112764 ATTTTCGAAACAATCTATTTCGCTGC 112789
||||| ||||| ||||||| |||||
Sbjct 94950 ATTTTTGAAACCATCTATTATGCTGC 94925
Score = 93.3 bits (102), Expect = 1e-13
Identities = 172/249 (69%), Gaps = 4/249 (2%)
Strand=Plus/Minus
Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802
||||| ||| | ||||| | ||| | ||||||||||| |||| |||||||| ||
Sbjct 95872 AGAGACCTGGGGCGTTTGCGGTATATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 95813
Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860
| || || |||| | || ||| | |||||| | |||| || ||||| ||||||||
Sbjct 95812 TTGA--CGCGAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTATGC 95755
Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920
| ||||| | ||| |||||||||| || || ||| | || ||||| || ||
Sbjct 95754 CCTCTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 95695
Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980
||| |||||| | |||||| | | ||| | | || | ||||||||| | | ||
Sbjct 95694 GTGCCCTCATGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 95635
Query 110981 CGAAAAATA 110989
|||||| ||
Sbjct 95634 CGAAAAGTA 95626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186725334863672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |