Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq241 86.0 4e-12 seq36 86.0 4e-12 >seq241 Length=39592 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || |||||||| || ||||||||||| || ||||| |||||||| Sbjct 21454 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 21513 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | || ||| |||| ||||| ||||| || | ||| Sbjct 21514 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 21548 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || |||||||| || ||||||||||| || ||||| |||||||| Sbjct 22736 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 22795 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | || ||| |||| ||||| ||||| || | ||| Sbjct 22796 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 22830 >seq36 Length=323583 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| || |||||||| || ||||||||||| || ||||| |||||||| Sbjct 17826 CCACCGCGCAAACGCAAAACCAAATGAAGCGTGCTCTCTTTCTGAATGTTATAATCGGAC 17767 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 | || ||| |||| ||||| ||||| || | ||| Sbjct 17766 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 17732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328680957027840