Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq118 84.2 2e-11 seq315 82.4 7e-11 >seq118 Length=130256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 |||||||||||| || | || | || || || ||||||| ||||||||| || || || Sbjct 94144 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 94203 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | |||||||| |||| || ||| || |||| ||| | ||| |||| ||||| Sbjct 94204 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 94263 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 | | || ||| | ||| ||| || || ||| | | ||| | || |||||||||| Sbjct 94264 TATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTC 94323 Query 136818 CAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853 | | |||||| |||||||||| | || || Sbjct 94324 TATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 94359 >seq315 Length=12309 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| ||||||| | ||||| ||| ||| | Sbjct 7573 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAA-CCATC 7515 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | |||||| |||||| ||||||||||| || || || ||||| Sbjct 7514 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 7455 Query 25294 GCAAAGACTCATTT 25307 |||| | || |||| Sbjct 7454 GCAACGTCTGATTT 7441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445062397712640