Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq118 84.2 2e-11
seq315 82.4 7e-11
>seq118
Length=130256
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697
|||||||||||| || | || | || || || ||||||| ||||||||| || || ||
Sbjct 94144 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 94203
Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757
| |||||||| |||| || ||| || |||| ||| | ||| |||| |||||
Sbjct 94204 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 94263
Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817
| | || ||| | ||| ||| || || ||| | | ||| | || ||||||||||
Sbjct 94264 TATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTC 94323
Query 136818 CAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853
| | |||||| |||||||||| | || ||
Sbjct 94324 TATGACGCATTTTTGGGAAATTTCCCAAACCGTCTT 94359
>seq315
Length=12309
Score = 82.4 bits (90), Expect = 7e-11
Identities = 100/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || | ||||| ||| ||||||| | ||||| ||| ||| |
Sbjct 7573 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAA-CCATC 7515
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || ||| | |||||| |||||| ||||||||||| || || || |||||
Sbjct 7514 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 7455
Query 25294 GCAAAGACTCATTT 25307
|||| | || ||||
Sbjct 7454 GCAACGTCTGATTT 7441
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445062397712640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |