Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq241 113 5e-20 seq315 105 7e-18 seq36 105 7e-18 seq72 96.9 4e-15 seq4683 93.3 4e-14 seq3982 82.4 8e-11 >seq241 Length=39592 Score = 113 bits (124), Expect = 5e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || ||| Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717 | |||||| || || || ||||||||| Sbjct 21762 AGAGTTTTGACAAATATCTGCATTTTG 21788 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || ||||||||||||||||| ||||| || || || || ||||| |||||||| Sbjct 18420 CTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 18479 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 |||| ||| || || | ||| || || | ||| || || | || || ||||| || Sbjct 18480 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCC 18539 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| | ||| ||||| |||||||||||| Sbjct 18540 GGTAAGAGTCTTAACAAAAATTTGCATT 18567 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 18829 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 18830 GTCTTAACGAAAATTTGCATT 18850 Score = 105 bits (116), Expect = 7e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 19548 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 19607 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 |||| ||| || || | ||| || || | ||| || || | ||| || ||||| || Sbjct 19608 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 19667 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || |||||||||||||||||| Sbjct 19668 AGTAAGGGTCTTAACGAAAATTTGCATT 19695 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || || Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 23044 AGAGTTTTCACAAATATCTGCATTTT 23069 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| ||||||||||| | Sbjct 17865 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 17924 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 17925 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 17984 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 17985 GTCTTAACAAAAATTTGCATT 18005 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || || ||||| |||||||||||| | Sbjct 20117 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCCT 20176 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | ||| || ||||| || || | Sbjct 20177 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 20236 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 20237 GTCTTAACGAAAATTTGCATT 20257 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || |||||||| || || || ||||| Sbjct 18989 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 19048 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 19049 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 19108 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 19109 AGAGTCTTAACAAAAATTTGCATT 19132 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 19275 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19334 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 19335 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19394 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 19395 GTCTTAACGAAAATTTGCATT 19415 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 19834 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 19893 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 19894 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 19953 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| |||||||||||||||||| Sbjct 19954 AGAGTCTTAACGAAAATTTGCATT 19977 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 20396 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 20455 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 20456 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 20515 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| |||||||||||||||||| Sbjct 20516 AGAGTCTTAACGAAAATTTGCATT 20539 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || ||||| || || || ||||| | Sbjct 27018 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26959 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 26958 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26899 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 26898 GTCTTAACGAAAATTTGCATT 26878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || ||||| || || || || Sbjct 20672 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 20731 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||| || || | ||| || || | ||| || || | ||| || ||||| || Sbjct 20732 TTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 20791 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || |||||||||||||||||| Sbjct 20792 AGTAAGGGTCTTAACGAAAATTTGCATT 20819 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 21313 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 21372 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 21373 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 21432 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 21433 GTTTTCACAAATATCTGCAT 21452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 22595 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 22654 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 22655 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 22714 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 22715 GTTTTCACAAATATCTGCAT 22734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| |||||| ||||| || || || || || || |||||||| || | Sbjct 17582 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 17641 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | |||||| || | || |||||||| || |||| Sbjct 17642 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 17701 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 17702 GTCTTAACAAAAATTTGCATT 17722 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || |||||||| || || || ||||| Sbjct 18144 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 18203 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT-GGTTTTACCGGT 134689 ||| || || | ||| || || | ||| || || | || || | |||| ||||| Sbjct 18204 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTTGCCGGT 18263 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 18264 AAGAGTCTTAACAAAAATTTGCATT 18288 >seq315 Length=12309 Score = 105 bits (116), Expect = 7e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 11306 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 11365 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 |||| ||| || || | ||| || || | ||| || || | ||| || ||||| || Sbjct 11366 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 11425 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || |||||||||||||||||| Sbjct 11426 AGTAAGGGTCTTAACGAAAATTTGCATT 11453 Score = 105 bits (116), Expect = 7e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 12148 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 12207 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 |||| ||| || || | ||| || || | ||| || || | ||| || ||||| || Sbjct 12208 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 12267 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || |||||||||||||||||| Sbjct 12268 AGTAAGGGTCTTAACGAAAATTTGCATT 12295 Score = 104 bits (114), Expect = 2e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || || Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203 Query 134691 AAAGTTTTAACGAAAATTTGCATTT 134715 | |||||| || || || ||||||| Sbjct 9204 AGAGTTTTGACAAATATCTGCATTT 9228 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||||||||| ||||| || || || || ||||| |||||||||||| Sbjct 7147 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7206 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | ||| || ||||| || || Sbjct 7207 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 7266 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 7267 AGAGTCTTAACAAAAATTTGCATT 7290 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || || ||||| ||||||||||| | Sbjct 7434 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 7493 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 7494 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 7553 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 7554 GTCTTAACGAAAATTTGCATT 7574 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||||||||| ||||| || || || || ||||| |||||||||||| Sbjct 7713 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7772 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | ||| || ||||| || || Sbjct 7773 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 7832 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 7833 AGAGTCTTAACAAAAATTTGCATT 7856 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || ||||| || || || || Sbjct 11868 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT 11927 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||| || || | ||| || || | |||||| || | || |||||||| || Sbjct 11928 TTTCCCTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCC 11987 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| | || ||||| |||||||||||| Sbjct 11988 GGTGAGGGTCTTAACAAAAATTTGCATT 12015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || || ||||| ||||||| ||||| Sbjct 6870 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAA--TTTTGC 6927 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 | || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 6928 CTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6987 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 6988 GTCTTAACGAAAATTTGCATT 7008 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 11030 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11089 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 11090 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11149 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| |||||||||||||||||| Sbjct 11150 AGAGTCTTAACGAAAATTTGCATT 11173 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 11592 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11651 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 11652 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11711 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| |||||||||||||||||| Sbjct 11712 AGAGTCTTAACGAAAATTTGCATT 11735 >seq36 Length=323583 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || || Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 17518 AGAGTTTTCACAAATATCTGCATTTT 17493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 17967 CCAGCAAAAATCAGCCGCTGTTGATCTGGTGGAATGCCTTCTTTGTCTTGAATCTTGCTT 17908 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 17907 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 17848 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 17847 GTTTTCACAAATATCTGCAT 17828 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| | Sbjct 41256 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41315 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || |||| || || || | || || ||||| || ||||| Sbjct 41316 TTTACATTTTCAATCGTATCAGACGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41375 Query 134694 GTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| |||||| Sbjct 41376 GTTTTCACAAAAATCTGCATT 41396 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| | Sbjct 41542 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 41601 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || | || || ||||| || ||||| Sbjct 41602 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 41661 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| ||||| Sbjct 41662 GTTTTCACAAAAATCTGCAT 41681 >seq72 Length=199954 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802 ||||||| || || |||| |||||||||||||| | ||||||||| | || || |||| Sbjct 23698 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 23639 Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862 | | | ||||||| ||| ||||| |||||||| || | ||| || ||| ||||||| Sbjct 23638 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACG 23579 Query 21863 CCACCA 21868 | |||| Sbjct 23578 CGACCA 23573 >seq4683 Length=240 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 3 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 62 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 63 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 122 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 123 GTCTTAACGAAAATTTGCATT 143 >seq3982 Length=267 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| | Sbjct 140 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 81 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || | || || ||||| || ||||| Sbjct 80 TTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 21 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| ||||| Sbjct 20 GTTTTCACAAAAATCTGCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505362061855040