Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq118 125 1e-23
>seq118
Length=130256
Score = 125 bits (138), Expect = 1e-23
Identities = 143/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453
||| || || || | | ||||||||| || ||||||||||| |||| ||||||||
Sbjct 94168 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 94227
Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513
|||||| ||| | ||| | |||| | || |||||||| |||||||||| ||| ||
Sbjct 94228 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 94287
Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573
||| || ||||| ||||| || || || ||||| | ||| | | ||||| | ||||||
Sbjct 94288 TTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 94347
Query 68574 CCAAATAGTCTT 68585
||||| |||||
Sbjct 94348 CCAAACCGTCTT 94359
Score = 114 bits (126), Expect = 2e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575
||| || ||||| ||||| | ||| |||||||||||||||||| || ||||||| |||
Sbjct 95643 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 95702
Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635
||| | | || | | || || ||||| |||||||| || ||||| || || |||
Sbjct 95703 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 95762
Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695
| ||||| || || |||||||| ||||| || ||||| || ||||| || |
Sbjct 95763 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 95822
Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728
|| || | ||||| ||||| | ||||| |||
Sbjct 95823 TATGTCTGCGTGCCAAGGTTCCAAATATACCGC 95855
Score = 89.7 bits (98), Expect = 7e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374
|||||| | || || || || || || |||||| ||||| |||||||||||||||||
Sbjct 95382 ATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 95441
Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
||| | || || || || ||||| | |||||||| || || |||||||| |||||
Sbjct 95442 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGA 95501
Query 69435 TTCGATAAT 69443
|| |||||
Sbjct 95502 CTCAATAAT 95510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686859411257280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |