Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq118 125 1e-23 >seq118 Length=130256 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| || || || | | ||||||||| || ||||||||||| |||| |||||||| Sbjct 94168 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 94227 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 |||||| ||| | ||| | |||| | || |||||||| |||||||||| ||| || Sbjct 94228 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 94287 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 ||| || ||||| ||||| || || || ||||| | ||| | | ||||| | |||||| Sbjct 94288 TTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 94347 Query 68574 CCAAATAGTCTT 68585 ||||| ||||| Sbjct 94348 CCAAACCGTCTT 94359 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| || ||||| ||||| | ||| |||||||||||||||||| || ||||||| ||| Sbjct 95643 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 95702 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | || | | || || ||||| |||||||| || ||||| || || ||| Sbjct 95703 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 95762 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct 95763 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 95822 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || | ||||| ||||| | ||||| ||| Sbjct 95823 TATGTCTGCGTGCCAAGGTTCCAAATATACCGC 95855 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||||| | || || || || || || |||||| ||||| ||||||||||||||||| Sbjct 95382 ATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 95441 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||| | || || || || ||||| | |||||||| || || |||||||| ||||| Sbjct 95442 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTGAGA 95501 Query 69435 TTCGATAAT 69443 || ||||| Sbjct 95502 CTCAATAAT 95510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686859411257280