Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq72 154 1e-32
>seq72
Length=199954
Score = 154 bits (170), Expect = 1e-32
Identities = 238/334 (71%), Gaps = 13/334 (4%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963
|| ||| |||||||| ||||| || | || ||||| | ||| ||||| || |||||||||
Sbjct 23341 CGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCAAATTGCC 23400
Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023
||||||||| | ||||| ||||||||||| || |||| || || |||||| |||
Sbjct 23401 ATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGAT--- 23457
Query 44024 CACGAGAAGCATCGAT----TGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATA 44078
| | | ||| | ||| |||| || ||||| || | || | | |||| | || | |
Sbjct 23458 CCGGTGGAGCGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TGAAGAAAA 23515
Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTG 44135
||||||||||||| | ||||| | | | | | ||| | ||||| | |
Sbjct 23516 AAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGG 23575
Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195
||||||| |||| ||| ||||||||||||||||| || || ||| | || || ||||
Sbjct 23576 TCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGT 23635
Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229
| || || || || ||||||| || ||||||||
Sbjct 23636 TGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTT 23669
Score = 82.4 bits (90), Expect = 6e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| ||||| || ||||||||| ||||| ||||||| ||||| |||||||| ||||
Sbjct 24100 AAAATCCGTTCGACTTTATGGAATTGATTTCACTGGAAGGTAAAACGAACTTTTTCGAAA 24159
Query 44553 AACGCGTTGGAGAATATCAG 44572
||||||| || ||||| |||
Sbjct 24160 AACGCGTCGGCGAATACCAG 24179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397428137340760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |