Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq72 154 1e-32 >seq72 Length=199954 Score = 154 bits (170), Expect = 1e-32 Identities = 238/334 (71%), Gaps = 13/334 (4%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| |||||||| ||||| || | || ||||| | ||| ||||| || ||||||||| Sbjct 23341 CGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCAAATTGCC 23400 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 ||||||||| | ||||| ||||||||||| || |||| || || |||||| ||| Sbjct 23401 ATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGAT--- 23457 Query 44024 CACGAGAAGCATCGAT----TGTTTAATGCGATAGA-AACAGTACCTGCGATTAAACATA 44078 | | | ||| | ||| |||| || ||||| || | || | | |||| | || | | Sbjct 23458 CCGGTGGAGCGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TGAAGAAAA 23515 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT---CTTTTGGAGAACGACTTG 44135 ||||||||||||| | ||||| | | | | | ||| | ||||| | | Sbjct 23516 AAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGG 23575 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 ||||||| |||| ||| ||||||||||||||||| || || ||| | || || |||| Sbjct 23576 TCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGT 23635 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 | || || || || ||||||| || |||||||| Sbjct 23636 TGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTT 23669 Score = 82.4 bits (90), Expect = 6e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| ||||| || ||||||||| ||||| ||||||| ||||| |||||||| |||| Sbjct 24100 AAAATCCGTTCGACTTTATGGAATTGATTTCACTGGAAGGTAAAACGAACTTTTTCGAAA 24159 Query 44553 AACGCGTTGGAGAATATCAG 44572 ||||||| || ||||| ||| Sbjct 24160 AACGCGTCGGCGAATACCAG 24179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428137340760