Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq241 96.9 3e-15
seq36 96.9 3e-15
seq315 91.5 1e-13
>seq241
Length=39592
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||| || |||||
Sbjct 23044 AGAGTTTTCACAAATATCTGCAT 23066
Score = 89.7 bits (98), Expect = 4e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27101 CTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGAT 27160
||| ||||| || |||| | ||||||||||||||| || | ||||||||||| ||
Sbjct 18420 CTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 18479
Query 27161 CTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCC 27220
|| ||||| |||||| || || | | ||| ||||||| || || | ||||||
Sbjct 18480 TTTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCC 18539
Query 27221 CGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || ||||| ||||||||
Sbjct 18540 GGTAAGAGTCTTAACAAAAATTTGCAT 18566
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || ||| ||||| ||||| || | ||| || ||
Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 21762 AGAGTTTTGACAAATATCTGCAT 21784
>seq36
Length=323583
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||| || |||||
Sbjct 17518 AGAGTTTTCACAAATATCTGCAT 17496
>seq315
Length=12309
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || ||| ||||| ||||| || | ||| || |||
Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 9204 AGAGTTTTGACAAATATCTGCAT 9226
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || | || | ||||||||||||||| || | ||||||||||| || ||
Sbjct 7147 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7206
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||||| |||||| || || | | ||| ||||| | |||||| | ||| || ||
Sbjct 7207 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 7266
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
||||| || ||||| ||||||||
Sbjct 7267 AGAGTCTTAACAAAAATTTGCAT 7289
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || | || | ||||||||||||||| || | ||||||||||| || ||
Sbjct 7713 TTACCAGCAAATATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTT 7772
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||||| |||||| || || | | ||| ||||| | |||||| | ||| || ||
Sbjct 7773 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 7832
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
||||| || ||||| ||||||||
Sbjct 7833 AGAGTCTTAACAAAAATTTGCAT 7855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424904611036224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |