Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq241 95.1 9e-15
seq36 95.1 9e-15
>seq241
Length=39592
Score = 95.1 bits (104), Expect = 9e-15
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981
||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || ||||||
Sbjct 21548 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 21489
Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| | |||||||||||||||||||| || ||
Sbjct 21488 AGCACGCTTCATTTGGTTTTGCGTTTGCGCGGTGG 21454
Score = 95.1 bits (104), Expect = 9e-15
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981
||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || ||||||
Sbjct 22830 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 22771
Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| | |||||||||||||||||||| || ||
Sbjct 22770 AGCACGCTTCATTTGGTTTTGCGTTTGCGCGGTGG 22736
>seq36
Length=323583
Score = 95.1 bits (104), Expect = 9e-15
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981
||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || ||||||
Sbjct 17732 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 17791
Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| | |||||||||||||||||||| || ||
Sbjct 17792 AGCACGCTTCATTTGGTTTTGCGTTTGCGCGGTGG 17826
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987
|| |||||| |||| || | || | || ||||| ||||| ||||| ||||| ||||||
Sbjct 41485 GGGAAACAACTGGAAGATGGTCGTACGTTATCCGACTACAATATCCAGAAAGAAAGCACT 41426
Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| ||||||| ||||||||
Sbjct 41425 TTGCATTTGGTGCTGCGTTTACGTGGCGG 41397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355837453156104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |