Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq315 86.0 4e-12 seq241 86.0 4e-12 seq36 86.0 4e-12 >seq315 Length=12309 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| ||||| || |||||||| || ||| | ||||| || | | Sbjct 11453 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 11394 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||||| || ||||| || | || || ||||| Sbjct 11393 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 11334 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACA 23756 ||| ||||| || ||||| || || || Sbjct 11333 ACAACGTTTGATTTTTGCTGGTAAGCA 11307 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| ||||| || |||||||| || ||| | ||||| || | | Sbjct 12295 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 12236 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||||| || ||||| || | || || ||||| Sbjct 12235 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 12176 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACA 23756 ||| ||||| || ||||| || || || Sbjct 12175 ACAACGTTTGATTTTTGCTGGTAAGCA 12149 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || |||||||| || ||| | ||||| || | | Sbjct 7290 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7231 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||||| || ||||| || | || || ||||| Sbjct 7230 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 7171 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||||||||| |||||||| || || Sbjct 7170 ACAGCGTTTGATATTTGCTGGTAA 7147 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || |||||||| || ||| | ||||| || | | Sbjct 7856 AATGCAAATTTTTGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7797 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||||| || ||||| || | || || ||||| Sbjct 7796 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 7737 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||||||||| |||||||| || || Sbjct 7736 ACAGCGTTTGATATTTGCTGGTAA 7713 >seq241 Length=39592 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| ||||| || |||||||| || ||| | ||||| || | | Sbjct 19695 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 19636 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||||| || ||||| || | || || ||||| Sbjct 19635 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 19576 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACA 23756 ||| ||||| || ||||| || || || Sbjct 19575 ACAACGTTTGATTTTTGCTGGTAAGCA 19549 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 21452 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 21393 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 21392 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 21333 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 21332 CAGCGGCTGATTTTTGCTGG 21313 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 22734 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 22675 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 22674 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 22615 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 22614 CAGCGGCTGATTTTTGCTGG 22595 Score = 84.2 bits (92), Expect = 1e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||||||||| ||||| || |||||||| || ||| | ||||| || | | Sbjct 20257 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 20198 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| ||||||| || ||||| || | || || ||||| Sbjct 20197 TGATACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 20138 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 ||| ||||| || ||||| || Sbjct 20137 ACAACGTTTGATTTTTGCTGG 20117 >seq36 Length=323583 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 17828 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 17887 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 17888 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATTCCACCAGATCAA 17947 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 17948 CAGCGGCTGATTTTTGCTGG 17967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985904682016