Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq118 141 1e-28
>seq118
Length=130256
Score = 141 bits (156), Expect = 1e-28
Identities = 147/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861
||| || || || | | ||||||||| |||||||| |||||| |||| ||||||||
Sbjct 94168 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAA 94227
Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921
|||||| ||||| ||| | |||| | || |||||||| |||||||||| ||||||
Sbjct 94228 ATGCATTGATGTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGA 94287
Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981
||| || ||||| ||||| || ||||| ||||| | ||| | | ||||| | ||||||
Sbjct 94288 TTGGTCAATGAATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 94347
Query 76982 CCAAATAGTTTTG 76994
||||| || |||
Sbjct 94348 CCAAACCGTCTTG 94360
Score = 140 bits (154), Expect = 5e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
|||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| |||
Sbjct 95643 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 95702
Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043
||| || || || | | || || ||||| || |||||||||||||| || ||| |||
Sbjct 95703 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAA 95762
Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103
| |||||||| || | |||||| ||||| |||||||| || ||||| || |
Sbjct 95763 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 95822
Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150
|| || | ||||| ||||| | ||||| || | | |||||||
Sbjct 95823 TATGTCTGCGTGCCAAGGTTCCAAATATACCGCAAACGCCCCAGGTC 95869
Score = 114 bits (126), Expect = 2e-20
Identities = 186/261 (71%), Gaps = 10/261 (4%)
Strand=Plus/Plus
Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343
||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || |
Sbjct 94794 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 94853
Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402
||||||| ||| || | ||| || || || || || |||||| || | || |||
Sbjct 94854 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAA 94912
Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459
|| ||| || || | ||||| || ||||| ||||| |||||||| | |||| | |
Sbjct 94913 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 94972
Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518
|||| || ||||||||||| | | | |||||| ||||| || ||||| || ||
Sbjct 94973 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTAC 95028
Query 77519 TCCAATACCAATAGGTCTATG 77539
||||||||||| |||| |||
Sbjct 95029 ACCAATACCAATTGGTCGATG 95049
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182
|| |||||||||||| || | || | |||||| || | ||| || || | ||| ||
Sbjct 94561 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 94620
Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242
||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| ||
Sbjct 94621 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 94680
Query 77243 ACTATTTCTGAGACCAT 77259
|||||| |||||||
Sbjct 94681 CGAATTTCTCAGACCAT 94697
Score = 86.0 bits (94), Expect = 9e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 77720 GGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779
|| |||||| | || ||||| || || || |||||| ||||| ||||||||||| ||
Sbjct 95379 GGAATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTG 95438
Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839
|| ||| ||||||| | || || || | |||||||| || ||||||||||| ||
Sbjct 95439 ATTCGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCGGTTTCAATTTG 95498
Query 77840 TGATTCGATAAT 77851
|| || |||||
Sbjct 95499 AGACTCAATAAT 95510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694618853313280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |