Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq118 143 4e-29 >seq118 Length=130256 Score = 143 bits (158), Expect = 4e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || |||| ||||| ||||| | | ||| || || || | | ||||||||| ||| Sbjct 94139 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 94198 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| |||||| |||| |||||||||||||| ||| | ||| | |||| |||| Sbjct 94199 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 94258 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 |||||||| |||||||||| |||||| ||| || ||||| ||||| || ||||| ||| Sbjct 94259 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 94318 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589 || | ||| | | ||||| | ||||||||||| || ||| Sbjct 94319 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 94360 Score = 129 bits (142), Expect = 8e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 ||||| |||||| ||||| ||||| | ||| |||| ||||||||||||| || ||| Sbjct 95635 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 95694 Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630 |||| |||||| || || || | | || || ||||| || |||||||||||||| || Sbjct 95695 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 95754 Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690 ||| ||| | |||||||| || |||||| ||||| |||||||| || || Sbjct 95755 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 95814 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || || | || || | ||||| ||||| | ||||| ||| Sbjct 95815 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATATACCGC 95855 Score = 114 bits (126), Expect = 2e-20 Identities = 196/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938 ||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || | Sbjct 94794 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 94853 Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 | ||||| ||| || | ||| || ||||| | || || || || | ||||||| Sbjct 94854 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAAC 94913 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055 | ||||||||| | ||||| || ||||| ||||| |||||||| | |||| || Sbjct 94914 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 94973 Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115 |||| || | |||| ||||| | | | |||||| ||||| || | ||| || || | Sbjct 94974 CTTCG-GATT--CAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACAC 95030 Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 |||||||||| |||| ||| | || || || |||| || Sbjct 95031 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGC 95070 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 |||||||||||| || | || | ||||| || | ||| || || | ||| || || Sbjct 94564 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 94623 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||| ||||||||||| || || || ||||||||||| || |||| ||| || Sbjct 94624 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAACGA 94683 Query 75841 ATTTCTGAGACCAT 75854 |||||| ||||||| Sbjct 94684 ATTTCTCAGACCAT 94697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712883140016640