Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq315 98.7 2e-15 seq241 98.7 2e-15 seq4683 96.9 7e-15 seq36 95.1 3e-14 >seq315 Length=12309 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 11030 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11089 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 11090 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11149 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 11150 AGAGTCTTAACGAAAATTTGCATT 11173 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 11592 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 11651 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 11652 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 11711 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 11712 AGAGTCTTAACGAAAATTTGCATT 11735 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 11307 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 11366 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 11367 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 11426 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 11427 GTAAGGGTCTTAACGAAAATTTGCATT 11453 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 12149 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 12208 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 12209 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 12268 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 12269 GTAAGGGTCTTAACGAAAATTTGCATT 12295 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || || || Sbjct 7434 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTGCCT 7493 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 7494 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 7553 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 7554 GTCTTAACGAAAATTTGCATT 7574 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 9084 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 9143 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | ||| ||||| ||||| || || || || ||| Sbjct 9144 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 9203 Query 283077 AAAGTCTTAACGAATATCTGCATTT 283101 | ||| || || ||||||||||||| Sbjct 9204 AGAGTTTTGACAAATATCTGCATTT 9228 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| ||||| || ||||| || ||||| Sbjct 6870 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAAT-TTTGCC 6928 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 6929 TT-ACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6987 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 6988 GTCTTAACGAAAATTTGCATT 7008 >seq241 Length=39592 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 19834 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 19893 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 19894 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 19953 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 19954 AGAGTCTTAACGAAAATTTGCATT 19977 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 20396 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 20455 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 20456 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 20515 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 20516 AGAGTCTTAACGAAAATTTGCATT 20539 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||||||||||||| || ||||| || ||||| || || || || || Sbjct 19275 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 19334 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 19335 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 19394 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 19395 GTCTTAACGAAAATTTGCATT 19415 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 19549 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 19608 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||| |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 19609 TTTCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 19668 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 19669 GTAAGGGTCTTAACGAAAATTTGCATT 19695 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 22924 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 22983 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | ||| ||||| ||||| || || || || ||| Sbjct 22984 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 23043 Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103 | ||| || || ||||||||||||||| Sbjct 23044 AGAGTTTTCACAAATATCTGCATTTTC 23070 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||||||||||||| || ||||| ||||| || ||||| || ||| || Sbjct 20117 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTTCCT 20176 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || || || || | ||| ||||| | ||| || || || || || | Sbjct 20177 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 20236 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 20237 GTCTTAACGAAAATTTGCATT 20257 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 18989 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATGCCTTCCTTATCCTGTATTTTG 19048 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 |||| || | || || || || || | ||| ||||| | |||||||| || || || Sbjct 19049 CCTTTCACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTA 19108 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||||||| || || |||||| Sbjct 19109 AGAGTCTTAACAAAAATTTGCATT 19132 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| || || || ||||| || || || Sbjct 18710 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 18769 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 18770 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 18829 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 18830 GTCTTAACGAAAATTTGCATT 18850 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 21642 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 21701 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | ||| ||||| ||||| || || || || || Sbjct 21702 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTT 21761 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 | ||| || || |||||||||||||| Sbjct 21762 AGAGTTTTGACAAATATCTGCATTTT 21787 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||| |||||| || || ||||| || ||||| || || || || || Sbjct 27018 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 26959 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 26958 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 26899 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 26898 GTCTTAACGAAAATTTGCATT 26878 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| || ||||| || || || Sbjct 20673 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATT 20732 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 20733 TTCCCTTTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 20792 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 20793 GTAAGGGTCTTAACGAAAATTTGCATT 20819 >seq4683 Length=240 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| |||||||||||||| || ||||| || ||||| || || || || || Sbjct 3 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 62 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 63 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 122 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 123 GTCTTAACGAAAATTTGCATT 143 >seq36 Length=323583 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 17638 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 17579 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | ||| ||||| ||||| || || || || ||| Sbjct 17578 CCCTTCACATTTTCAATTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 17519 Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103 | ||| || || ||||||||||||||| Sbjct 17518 AGAGTTTTCACAAATATCTGCATTTTC 17492 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || |||||||| || | ||| || ||| ||||| || ||||| || || || Sbjct 41963 TGATTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT- 42021 Query 283014 TTTGCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 ||| |||||| | | ||||| ||||| || | ||| ||||| || || || || || || Sbjct 42022 TTTACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCC 42081 Query 283073 CGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||||||||| Sbjct 42082 AGTAAGTGTCTTCACGAATATCTGCAT 42108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046662057937808