Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq36 104 6e-17 seq241 98.7 2e-15 seq315 95.1 3e-14 seq4683 89.7 1e-12 >seq36 Length=323583 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || |||| | || || |||||||| || || || |||||||| || || || || || | Sbjct 42116 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 42057 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || |||||||||||||| || || ||| || |||||||| || ||||| || |||| Sbjct 42056 AACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 41997 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 | || |||||| || | ||||| || || || ||| Sbjct 41996 CTGATCAGCAAAGATTAATCTTTGCAGGTAATCAG 41962 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||||||||| || || ||||| || || || || |||||| Sbjct 17493 AAAATGC---AGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAA 17549 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||||| || || || || || || |||||||| ||||| ||||| || || Sbjct 17550 CCCTCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 17609 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || ||||| || || || || || || Sbjct 17610 GATCAACAACGTCTGATTTTTGCTGGTAA 17638 >seq241 Length=39592 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 18846 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 18787 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 18786 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 18727 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 18726 CGTCTGATTTTTGCTGG 18710 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 18001 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 17942 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 17941 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 17882 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 17881 CGTCTGATTTTTGCTGG 17865 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 26882 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 26941 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || || || |||||| Sbjct 26942 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 27001 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 27002 CGTCTGATTTTTGCTGG 27018 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 19973 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 19914 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 19913 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 19854 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 19853 CGTTTGATTTTTGCTGGTAA 19834 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 20535 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 20476 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 20475 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 20416 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 20415 CGTTTGATTTTTGCTGGTAA 20396 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||||||||| || || ||||| || || || || |||||| Sbjct 23069 AAAATGC---AGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAA 23013 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||||| || || || || || || |||||||| ||||| ||||| || || Sbjct 23012 CCCTCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 22953 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || ||||| || || || || || || Sbjct 22952 GATCAACAACGTCTGATTTTTGCTGGTAA 22924 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 19411 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 19352 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 19351 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 19292 Query 178044 CG 178045 || Sbjct 19291 CG 19290 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||||| || || |||||||||||| | || || ||| || || Sbjct 18563 CAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 18504 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || ||||| ||||| || ||||| || || Sbjct 18503 ACAATAGAAAATGTGAAAGGAAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAACAG 18444 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 || | || || || || || ||| Sbjct 18443 CGTTTGATTTTTGCTGGTAAGCAG 18420 >seq315 Length=12309 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 7570 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 7511 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||| ||||| || || || |||||| Sbjct 7510 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAA 7451 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 7450 CGTCTGATTTTTGCTGG 7434 Score = 91.5 bits (100), Expect = 4e-13 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 7004 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCTGAT 6945 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || | |||| ||||| || ||||| ||||| || || || |||||| Sbjct 6944 ACAATAGAGAATGTAAGGCAAA--ATTCAAGATAAAGAGGGAATTCCACCAGATCAGCAA 6887 Query 178044 CGACTTATCTTCGCCGG 178060 || || || || || || Sbjct 6886 CGTCTGATTTTTGCTGG 6870 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 11169 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 11110 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 11109 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 11050 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 11049 CGTTTGATTTTTGCTGGTAA 11030 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 11731 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 11672 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 11671 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 11612 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 11611 CGTTTGATTTTTGCTGGTAA 11592 >seq4683 Length=240 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || |||||||||||| | || || ||| || || Sbjct 139 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 80 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || |||||||| || ||||| || ||| Sbjct 79 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 20 Query 178044 CG 178045 || Sbjct 19 CG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642488019888