Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 3e-14 >seq4 Length=12041450 Score = 95.1 bits (104), Expect = 3e-14 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 || || || || |||||||| || ||| | || || | || | | || || ||| Sbjct 3767379 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 3767320 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||| | ||| ||| ||||||||||| || ||| ||| ||||||| || | Sbjct 3767319 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 3767260 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || || | | || || || ||||||||||| || ||||| ||||| ||||| Sbjct 3767259 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 3767200 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAAT---ATAAT 281978 | ||| || || ||||| ||| | | |||||| |||||| ||| | || Sbjct 3767199 GCTAGCTGAGCGACTTTCACTTCTCGTTTATCGTTGCGCTTGAAA---CAAGTGAACAAA 3767143 Query 281979 ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-C 282037 ||||||||||| |||||| || |||||||| | || |||||||| || || | | Sbjct 3767142 ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCC 3767083 Query 282038 ATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073 || || ||||||||| | || ||||| ||||| Sbjct 3767082 ATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 3767048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057730983221690