Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq4 95.1 3e-14
>seq4
Length=12041450
Score = 95.1 bits (104), Expect = 3e-14
Identities = 225/336 (67%), Gaps = 8/336 (2%)
Strand=Plus/Minus
Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801
|| || || || |||||||| || ||| | || || | || | | || || |||
Sbjct 3767379 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 3767320
Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861
|| ||| | ||| ||| ||||||||||| || ||| ||| ||||||| || |
Sbjct 3767319 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 3767260
Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921
|| || | | || || || ||||||||||| || ||||| ||||| |||||
Sbjct 3767259 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 3767200
Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAAT---ATAAT 281978
| ||| || || ||||| ||| | | |||||| |||||| ||| | ||
Sbjct 3767199 GCTAGCTGAGCGACTTTCACTTCTCGTTTATCGTTGCGCTTGAAA---CAAGTGAACAAA 3767143
Query 281979 ACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-C 282037
||||||||||| |||||| || |||||||| | || |||||||| || || | |
Sbjct 3767142 ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCC 3767083
Query 282038 ATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073
|| || ||||||||| | || ||||| |||||
Sbjct 3767082 ATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 3767048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057730983221690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |