Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7 120 4e-22 seq5 82.4 9e-11 >seq7 Length=809302 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| |||| Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 || | ||||| ||||| | ||||||||||| Sbjct 287693 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 287660 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| |||| Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 || | ||||| ||||| | ||||||||||| Sbjct 315457 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 315424 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 ||||| ||||| |||||||| | || ||||||| | | ||||||| | ||| Sbjct 313058 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 312999 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 312998 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 312939 Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883 | | ||||| |||||||||| |||||| ||||| | ||||| || | || | || Sbjct 312938 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 312879 Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912 |||||||| || ||||| || || | ||| Sbjct 312878 TCCAATTCGACAGTTGTGACACCTTGATA 312850 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 || ||| ||||||||| || ||||| | || |||||||||||||||| | || ||| Sbjct 314161 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCAC 314102 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 54060 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 314101 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 314043 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| | ||||| | || | ||| ||| ||||| |||||||| || || Sbjct 314042 GGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 313983 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || | | || || | ||||| |||||||| || Sbjct 313982 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 313947 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 315215 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 315156 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 315155 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 315096 Query 53269 ACTATTTCTAAGACCGTA 53286 |||||| ||||| || Sbjct 315095 CGAATTTCTCAGACCATA 315078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 314936 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 314877 Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 314876 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 314817 Query 53476 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532 | |||| | | |||| || | ||||| ||||| | | ||| || || || || Sbjct 314816 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATCCGC 314760 Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 314759 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 314703 Query 53593 AATAGGAT 53600 || ||||| Sbjct 314702 AAAAGGAT 314695 >seq5 Length=5663831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 1930759 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 1930700 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923 | || || ||||||| || ||| | ||||| Sbjct 1930699 CAGCGAAATCATTTCCATAAAGTCGAACGGATT 1930667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670666108240