Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq7 120 4e-22
seq5 82.4 9e-11
>seq7
Length=809302
Score = 120 bits (132), Expect = 4e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| ||||
Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012
|| | ||||| ||||| | |||||||||||
Sbjct 287693 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 287660
Score = 120 bits (132), Expect = 4e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| ||||
Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012
|| | ||||| ||||| | |||||||||||
Sbjct 315457 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 315424
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763
||||| ||||| |||||||| | || ||||||| | | ||||||| | |||
Sbjct 313058 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 312999
Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 312998 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 312939
Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883
| | ||||| |||||||||| |||||| ||||| | ||||| || | || | ||
Sbjct 312938 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 312879
Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912
|||||||| || ||||| || || | |||
Sbjct 312878 TCCAATTCGACAGTTGTGACACCTTGATA 312850
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001
|| ||| ||||||||| || ||||| | || |||||||||||||||| | || |||
Sbjct 314161 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCAC 314102
Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 54060
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 314101 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 314043
Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120
|| ||| | ||||| | || | ||| ||| ||||| |||||||| || ||
Sbjct 314042 GGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 313983
Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156
|| | | || || | ||||| |||||||| ||
Sbjct 313982 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 313947
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 315215 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 315156
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 315155 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 315096
Query 53269 ACTATTTCTAAGACCGTA 53286
|||||| ||||| ||
Sbjct 315095 CGAATTTCTCAGACCATA 315078
Score = 95.1 bits (104), Expect = 1e-14
Identities = 173/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Minus
Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 314936 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 314877
Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 314876 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 314817
Query 53476 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532
| |||| | | |||| || | ||||| ||||| | | ||| || || || ||
Sbjct 314816 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATCCGC 314760
Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 314759 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 314703
Query 53593 AATAGGAT 53600
|| |||||
Sbjct 314702 AAAAGGAT 314695
>seq5
Length=5663831
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890
||| |||||| ||| |||||||| || || |||||||||||||| || |||||||||||
Sbjct 1930759 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 1930700
Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATT 23923
| || || ||||||| || ||| | |||||
Sbjct 1930699 CAGCGAAATCATTTCCATAAAGTCGAACGGATT 1930667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593670666108240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |