Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 183 3e-41 >seq5 Length=5663831 Score = 183 bits (202), Expect = 3e-41 Identities = 268/374 (72%), Gaps = 9/374 (2%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || | || || | || || ||||||| || | ||||| ||||| || Sbjct 1929912 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 1929971 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC---ATCGACACGTACGT 116919 || ||||| || || || || || |||||||| | |||| |||||||| ||| | Sbjct 1929972 AATTGCCATAGAAAATGTCCATTCCGAAATGTAC---AGCCTCTTGATCGACACCTACAT 1930028 Query 116920 GCGCTCTTCGGAGGAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCA 116978 || | ||| ||| | | || |||| ||||| |||||||| || |||||||| | Sbjct 1930029 CCGTGATCCGGTGGA-ACGTGATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCGTGA 1930087 Query 116979 AAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGC 117038 | | || || || ||||| |||||||||||| | | | || | | || |||| | Sbjct 1930088 AGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAAC 1930147 Query 117039 GCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATAT 117098 | |||| || ||||| || || || ||| | |||||||| ||||| ||||| | || | Sbjct 1930148 GTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTT 1930207 Query 117099 TTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCA 117158 | ||| | || || |||||||| |||||||| |||| |||||||||||||| ||||| Sbjct 1930208 TCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTC 1930267 Query 117159 GGGACGAGGGTCTG 117172 | ||||| |||||| Sbjct 1930268 GTGACGA-GGTCTG 1930280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515175000632880