Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq5 183 3e-41
>seq5
Length=5663831
Score = 183 bits (202), Expect = 3e-41
Identities = 268/374 (72%), Gaps = 9/374 (2%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| || | || || | || || ||||||| || | ||||| ||||| ||
Sbjct 1929912 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 1929971
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC---ATCGACACGTACGT 116919
|| ||||| || || || || || |||||||| | |||| |||||||| ||| |
Sbjct 1929972 AATTGCCATAGAAAATGTCCATTCCGAAATGTAC---AGCCTCTTGATCGACACCTACAT 1930028
Query 116920 GCGCTCTTCGGAGGAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCA 116978
|| | ||| ||| | | || |||| ||||| |||||||| || |||||||| |
Sbjct 1930029 CCGTGATCCGGTGGA-ACGTGATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCGTGA 1930087
Query 116979 AAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGC 117038
| | || || || ||||| |||||||||||| | | | || | | || |||| |
Sbjct 1930088 AGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAAC 1930147
Query 117039 GCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATAT 117098
| |||| || ||||| || || || ||| | |||||||| ||||| ||||| | || |
Sbjct 1930148 GTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTT 1930207
Query 117099 TTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCA 117158
| ||| | || || |||||||| |||||||| |||| |||||||||||||| |||||
Sbjct 1930208 TCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTC 1930267
Query 117159 GGGACGAGGGTCTG 117172
| ||||| ||||||
Sbjct 1930268 GTGACGA-GGTCTG 1930280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515175000632880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |