Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 4e-17
>seq1
Length=3447954
Score = 104 bits (114), Expect = 4e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| ||
Sbjct 850201 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 850260
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| ||||||||||||||||| || || ||||| |||||
Sbjct 850261 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 850320
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687
|||| | | |||||||| || || || ||
Sbjct 850321 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 850350
Score = 102 bits (112), Expect = 1e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || || ||||| |||||| | || | ||| ||
Sbjct 889436 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 889495
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| ||||||||||||||||| || || ||||| |||||
Sbjct 889496 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 889555
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
||| | | |||||||| || || || |||
Sbjct 889556 ACAGCGTTTGATTTTTGCTGGTAAGCAGTTA 889586
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 798547 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATC 798606
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| |||||||||||||||||||| || ||||| |||||
Sbjct 798607 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 798666
Query 124658 ACAAAGGCTTATTTTTGCAGGA 124679
|||| | | ||||| || |||
Sbjct 798667 ACAACGTTTGATTTTAGCTGGA 798688
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| ||||| || ||||| || || | || | ||| ||
Sbjct 758556 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 758615
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| || ||| | ||| ||| |||||||||||||| || || || ||||||||
Sbjct 758616 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCTGATCA 758675
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 758676 GCAACGTCTGATTTTTGCTGG 758696
Score = 93.3 bits (102), Expect = 6e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 786940 AATGCAAATTTTTGTTAAGACCCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 786999
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| || ||| | ||| ||||||||||||||||| || || ||||| |||||
Sbjct 787000 TGATACCATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 787059
Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681
|||| | | |||||||| || ||
Sbjct 787060 ACAACGTTTGATTTTTGCTGGTAA 787083
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| ||||| || ||||| || || | || | ||| ||
Sbjct 793307 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 793366
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| || ||| ||||| ||| |||||||||||||| || || || || |||||
Sbjct 793367 TGATACTGTTGAGAATGTAAAAGGGAAGATTCAAGATAAAGAGGGAATTCCTCCCGATCA 793426
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 793427 GCAACGTCTGATTTTTGCTGG 793447
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | ||||| ||||| || || | || |||| |
Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || |||||||| |||||||| || ||||| ||||||
Sbjct 839438 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 839497
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 839498 CAGCGGCTTATTTTTGCTGG 839517
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| ||||| | |||||||| || || ||||||||||| |||| ||||| ||
Sbjct 863306 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 863365
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| |||||||| ||||| ||||| || || ||||||||
Sbjct 863366 GACACCATCGAGAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 863425
Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681
||||| | || |||||||| ||
Sbjct 863426 CAAAGATTAATCTTTGCAGGTAA 863448
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | || || | ||||| ||||| || || | || |||| |
Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || ||||| || |||||||| || ||||| ||||||
Sbjct 888864 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 888923
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 888924 CAGCGGCTTATTTTTGCTGG 888943
Score = 89.7 bits (98), Expect = 8e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 124670 TTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGA 124729
||||| ||||||||| || ||||||||| |||| || ||||||||||||||||||||
Sbjct 793495 TTTTGTAGGAAAACAGTTGGAGGATAGTAGAACGTTGTCCGATTATAATATTCAAAAAGA 793554
Query 124730 ATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
| || ||||| |||||| | ||| | || ||||||
Sbjct 793555 AAGCACATTGCACTTGGTTCTTCGTCTTCGCGGTGGT 793591
Score = 86.0 bits (94), Expect = 9e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 124670 TTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGA 124729
||||| ||||||||| || ||||||||| |||| || ||||||||||||||||||||
Sbjct 758744 TTTTGTAGGAAAACAGTTGGAGGATAGTAGAACGTTGTCCGATTATAATATTCAAAAAGA 758803
Query 124730 ATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
| || ||||| || ||| | ||| | || ||||||
Sbjct 758804 AAGCACATTGCACTTAGTTCTTCGTCTTCGCGGTGGT 758840
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | ||||| ||||| || || | || |||| |
Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || ||||| || |||||||| || ||||| ||||||
Sbjct 814492 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 814551
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 814552 CAGCGGCTTATTTTTGCTGG 814571
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | ||||| ||||| || || | || |||| |
Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || ||||| || |||||||| || ||||| ||||||
Sbjct 849629 GATACAATTGAAAATGTAAAAAGCAAGATTCAGGACAAAGAAGGCATCCCACCAGATCAA 849688
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 849689 CAGCGGCTTATTTTTGCTGG 849708
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730
||| |||| ||||| || || ||| |||||| ||| ||||||||||||||| ||||||
Sbjct 889341 TTTTCAGGCAAACAGTTGGAAGATGGTCGAATGTTATCAGATTATAATATTCAGAAAGAA 889400
Query 124731 TCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|| ||||||||||| | ||| |||| ||||| || ||| ||
Sbjct 889401 AGCACATTGCATTTGGTGCTTCGTCTACGCGGTGGAATGCAAATTT 889446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755391191318400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |