Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5 82.4 7e-11 >seq5 Length=5663831 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 45207 AGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAA 45266 || ||||| | | ||| || || ||||| |||||| | | |||||| |||| || |||| Sbjct 1930650 AGGTGTACAACAGTGAAAATCCGTTCGACTTTATGGAAATGATTTCGCTGGAAGGTAAAA 1930709 Query 45267 CTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 | || ||||| || |||||||||||||||||| || Sbjct 1930710 CGAACTTTTTCGAAAAACGCGTCGGCGAATACCAG 1930744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433794113205196