Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq1557 100 5e-16
>seq1557
Length=2489796
Score = 100 bits (110), Expect = 5e-16
Identities = 202/299 (68%), Gaps = 3/299 (1%)
Strand=Plus/Minus
Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTA 135696
||||||||| | || ||||||| || ||||||| || |||| | || ||||| ||
Sbjct 1016322 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 1016263
Query 135697 ACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATT 135756
|||||| || | || ||||| | ||||| || || |||||||| | || | |
Sbjct 1016262 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 1016203
Query 135757 GTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATG 135816
|| |||| |||||| || || || | | ||||||||||||||||| |||
Sbjct 1016202 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCTGCAATGAATACCTACATG 1016143
Query 135817 TGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCATA 135873
|||||||| || | || | ||||| || || | | | ||| || | || |||| |
Sbjct 1016142 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 1016083
Query 135874 GAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932
||| | ||||| || ||| || || || || ||| || |||||||||||||
Sbjct 1016082 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 1016024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923117601254520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |