Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1557 100 5e-16 >seq1557 Length=2489796 Score = 100 bits (110), Expect = 5e-16 Identities = 202/299 (68%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTA 135696 ||||||||| | || ||||||| || ||||||| || |||| | || ||||| || Sbjct 1016322 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 1016263 Query 135697 ACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATT 135756 |||||| || | || ||||| | ||||| || || |||||||| | || | | Sbjct 1016262 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 1016203 Query 135757 GTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATG 135816 || |||| |||||| || || || | | ||||||||||||||||| ||| Sbjct 1016202 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCTGCAATGAATACCTACATG 1016143 Query 135817 TGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCATA 135873 |||||||| || | || | ||||| || || | | | ||| || | || |||| | Sbjct 1016142 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 1016083 Query 135874 GAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932 ||| | ||||| || ||| || || || || ||| || ||||||||||||| Sbjct 1016082 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 1016024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923117601254520