Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 seq1557 107 2e-18 seq2 105 8e-18 >seq4 Length=12041450 Score = 116 bits (128), Expect = 4e-21 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 || |||| ||||||| |||| ||||||||||||| |||| |||||||||||||||| || Sbjct 5762830 TGGAAAAATTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 5762889 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||||| Sbjct 5762890 ACTCACCACTATACTACCGAGGAT 5762913 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 8049027 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 8048968 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 8048967 TATACTACCGAGGAT 8048953 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 8211961 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 8211902 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 8211901 TATACTACCGAGGAT 8211887 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 8049722 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 8049663 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 8049662 TACTACCGAGGAT 8049650 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 8212646 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 8212587 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 8212586 TACTACCGAGGAT 8212574 >seq1557 Length=2489796 Score = 107 bits (118), Expect = 2e-18 Identities = 96/119 (81%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 60020 TTTTATGTAATCAGATAACAACAAATT-AACGTTTATGAAAAATTTTCTCCTCGGCAGGG 60078 ||| || |||| | | | ||| || || || | ||| || ||| |||| |||| ||| Sbjct 1895206 TTTAATTTAATTAAAAATCAAAAATTTTAAACTGTATAAATAATCAACTCCCCGGCCGGG 1895147 Query 60079 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 1895146 AATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTATACTACCGAGGA 1895088 >seq2 Length=11347909 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 11193852 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 11193911 Query 60126 TACTACCGAGGATTGA 60141 |||||||||||| ||| Sbjct 11193912 TACTACCGAGGACTGA 11193927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571768545197640