Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq7 168 6e-37 seq5 149 6e-31 seq1 95.1 1e-14 seq388 82.4 7e-11 >seq7 Length=809302 Score = 168 bits (186), Expect = 6e-37 Identities = 259/368 (70%), Gaps = 11/368 (3%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 |||||||| || || || || || | | ||||| ||||| | | ||| ||||| || Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || ||||||||| ||||||| |||| ||||| || || |||||||| ||||| ||||| Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | |||| | ||| |||||||| || || || || ||||| | ||||||||| Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458 Query 22286 ATATTTATCAATGTACGCAT-----CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 || | ||| |||||| || |||||||| || |||||||||| || | | Sbjct 315457 ATGTCTAT-----GACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTA 315403 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 |||| |||||| ||||||||| ||| | ||| || || ||| ||||| ||||| Sbjct 315402 TCTCAGCCGGTATTGATTCGATCGACTGAATGGAACCTTTGTTGGCGATGATTTCATTTT 315343 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 ||| || || | ||| | ||| | || ||||||||| | || |||| | || || | Sbjct 315342 TAAGCGATTCATCCCAAAGACCCAATTCGACCAAATCTTTCATCAAATGATGATTGACAA 315283 Query 22461 -CTTGAAA 22467 ||| ||| Sbjct 315282 TCTTAAAA 315275 Score = 156 bits (172), Expect = 4e-33 Identities = 218/306 (71%), Gaps = 10/306 (3%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 |||||||| || || || || || | | ||||| ||||| | | ||| ||||| || Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || ||||||||| ||||||| |||| ||||| || || |||||||| ||||| ||||| Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | |||| | ||| |||||||| || || || || ||||| | ||||||||| Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694 Query 22286 ATATTTATCAATGTACGCAT-----CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 || | ||| |||||| || |||||||| || |||||||||| || | | Sbjct 287693 ATGTCTAT-----GACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTA 287639 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 |||| |||||| ||||||||| ||| | ||| || || ||| ||||| ||||| Sbjct 287638 TCTCAGCCGGTATTGATTCGATCGACTGAATGGAACCTTTGTTGGCGATGATTTCATTTT 287579 Query 22401 TAATCG 22406 ||| || Sbjct 287578 TAAGCG 287573 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || ||||| |||| || || || || Sbjct 314078 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAACAAATCTCGCGCTCG 314019 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 314018 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 313959 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | || || |||||||| || ||||||| Sbjct 313958 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 313924 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | || || | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 313699 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 313640 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694 | ||||| |||||||| ||||| ||||||||||| Sbjct 313639 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 313605 >seq5 Length=5663831 Score = 149 bits (164), Expect = 6e-31 Identities = 261/371 (70%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| || ||||||| |||||| | ||||| || ||||| | | || || || || || Sbjct 1929912 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 1929971 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| ||||| || ||||| |||||||| || | ||||| || ||| | Sbjct 1929972 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 1930031 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911 || || | | ||||| || ||||||||||||||||| || || || ||| | Sbjct 1930032 TGATC-CG--GTGGAACGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 1930086 Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970 || || ||||| ||| | | ||||| | || || | | | || ||| Sbjct 1930087 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 1930145 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | |||||||||| || || ||||| || |||||||| |||||||| ||| |||| Sbjct 1930146 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 1930205 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 1930206 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 1930265 Query 58091 GCGCGACGAGG 58101 || ||||||| Sbjct 1930266 TCGTGACGAGG 1930276 >seq1 Length=3447954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 816406 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 816465 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| || |||| ||| |||||||| | || || || || Sbjct 816466 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 816525 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 816526 CAACGTCTGATTTTTGCTGG 816545 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 786651 ATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 786710 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | |||| ||| |||||||| | ||||| || || Sbjct 786711 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCGCCAGATCAA 786770 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | || || ||||| Sbjct 786771 CAACGTTTGATTTTTGCTGG 786790 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 793020 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 793079 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | |||| ||| |||||||| | || || || || Sbjct 793080 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 793139 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | ||||| ||||| || Sbjct 793140 CAACGTTTGATATTTGCTGGTAA 793162 >seq388 Length=760 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | || || | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 600 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 541 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694 | ||||| |||||||| ||||| ||||||||||| Sbjct 540 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728158814960