Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq7 168 6e-37
seq5 149 6e-31
seq1 95.1 1e-14
seq388 82.4 7e-11
>seq7
Length=809302
Score = 168 bits (186), Expect = 6e-37
Identities = 259/368 (70%), Gaps = 11/368 (3%)
Strand=Plus/Minus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
|||||||| || || || || || | | ||||| ||||| | | ||| ||||| ||
Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225
|| ||||||||| ||||||| |||| ||||| || || |||||||| ||||| |||||
Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518
Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285
| | |||| | ||| |||||||| || || || || ||||| | |||||||||
Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458
Query 22286 ATATTTATCAATGTACGCAT-----CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340
|| | ||| |||||| || |||||||| || |||||||||| || | |
Sbjct 315457 ATGTCTAT-----GACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTA 315403
Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400
|||| |||||| ||||||||| ||| | ||| || || ||| ||||| |||||
Sbjct 315402 TCTCAGCCGGTATTGATTCGATCGACTGAATGGAACCTTTGTTGGCGATGATTTCATTTT 315343
Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460
||| || || | ||| | ||| | || ||||||||| | || |||| | || || |
Sbjct 315342 TAAGCGATTCATCCCAAAGACCCAATTCGACCAAATCTTTCATCAAATGATGATTGACAA 315283
Query 22461 -CTTGAAA 22467
||| |||
Sbjct 315282 TCTTAAAA 315275
Score = 156 bits (172), Expect = 4e-33
Identities = 218/306 (71%), Gaps = 10/306 (3%)
Strand=Plus/Minus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
|||||||| || || || || || | | ||||| ||||| | | ||| ||||| ||
Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225
|| ||||||||| ||||||| |||| ||||| || || |||||||| ||||| |||||
Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754
Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285
| | |||| | ||| |||||||| || || || || ||||| | |||||||||
Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694
Query 22286 ATATTTATCAATGTACGCAT-----CGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340
|| | ||| |||||| || |||||||| || |||||||||| || | |
Sbjct 287693 ATGTCTAT-----GACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTA 287639
Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400
|||| |||||| ||||||||| ||| | ||| || || ||| ||||| |||||
Sbjct 287638 TCTCAGCCGGTATTGATTCGATCGACTGAATGGAACCTTTGTTGGCGATGATTTCATTTT 287579
Query 22401 TAATCG 22406
||| ||
Sbjct 287578 TAAGCG 287573
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
||||| ||| |||| || ||||| |||||||| || ||||| |||| || || || ||
Sbjct 314078 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAACAAATCTCGCGCTCG 314019
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
|| || ||| |||||||||||| || | ||| || || | ||| || |||||
Sbjct 314018 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 313959
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
|| || | || || |||||||| || |||||||
Sbjct 313958 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 313924
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
||||||| | || || | ||||||||||| ||| | ||||||||| ||||| |||
Sbjct 313699 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 313640
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694
| ||||| |||||||| ||||| |||||||||||
Sbjct 313639 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 313605
>seq5
Length=5663831
Score = 149 bits (164), Expect = 6e-31
Identities = 261/371 (70%), Gaps = 12/371 (3%)
Strand=Plus/Plus
Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
||| || ||||||| |||||| | ||||| || ||||| | | || || || || ||
Sbjct 1929912 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 1929971
Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856
| | ||||| ||||| || ||||| |||||||| || | ||||| || ||| |
Sbjct 1929972 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 1930031
Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911
|| || | | ||||| || ||||||||||||||||| || || || ||| |
Sbjct 1930032 TGATC-CG--GTGGAACGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 1930086
Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970
|| || ||||| ||| | | ||||| | || || | | | || |||
Sbjct 1930087 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 1930145
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | |||||||||| || || ||||| || |||||||| |||||||| ||| ||||
Sbjct 1930146 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 1930205
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090
|| ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| ||
Sbjct 1930206 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 1930265
Query 58091 GCGCGACGAGG 58101
|| |||||||
Sbjct 1930266 TCGTGACGAGG 1930276
>seq1
Length=3447954
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 816406 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 816465
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| |||||||| | || || || ||
Sbjct 816466 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 816525
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 816526 CAACGTCTGATTTTTGCTGG 816545
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 786651 ATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 786710
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | |||| ||| |||||||| | ||||| || ||
Sbjct 786711 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCGCCAGATCAA 786770
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||| | || || |||||
Sbjct 786771 CAACGTTTGATTTTTGCTGG 786790
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 793020 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTGGAACCATCT 793079
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | |||| ||| |||||||| | || || || ||
Sbjct 793080 GATACAATAGAGAATGTAAAGGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 793139
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | ||||| ||||| ||
Sbjct 793140 CAACGTTTGATATTTGCTGGTAA 793162
>seq388
Length=760
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
||||||| | || || | ||||||||||| ||| | ||||||||| ||||| |||
Sbjct 600 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 541
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694
| ||||| |||||||| ||||| |||||||||||
Sbjct 540 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 506
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445728158814960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |