Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq7 116 5e-21
seq5 87.8 2e-12
>seq7
Length=809302
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250
|| | ||||| ||||| | |||||||||||
Sbjct 287693 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 287660
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250
|| | ||||| ||||| | |||||||||||
Sbjct 315457 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 315424
Score = 100 bits (110), Expect = 4e-16
Identities = 176/251 (70%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650
|||||| |||||||| ||||| || || ||| ||| || || ||||| || ||
Sbjct 314939 ATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTG 314880
Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710
| || | | ||||| ||||| ||| | ||||| ||||||||||| || |||||
Sbjct 314879 TTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTT 314820
Query 62711 ATTTAG--ATCTTG-TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767
||| | |||| | | |||| || | ||||| ||||| | | ||| || || ||
Sbjct 314819 ATTCAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATC 314763
Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTC 62827
||| |||||||| ||||||||||| || |||| ||| | || ||||| |||| || |
Sbjct 314762 CGCCAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT- 314704
Query 62828 TGGAATAGGAT 62838
||| |||||
Sbjct 314703 --GAAAAGGAT 314695
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446
|||||| |||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 315215 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 315156
Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 315155 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 315096
Query 62507 ACTATTTCTAAGACCGTA 62524
|||||| ||||| ||
Sbjct 315095 CGAATTTCTCAGACCATA 315078
>seq5
Length=5663831
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337
||| |||||| ||| |||||||| || || |||||||||||||| || ||||| |||||
Sbjct 1930759 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 1930700
Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370
|| || || ||||||| || || ||||||||
Sbjct 1930699 CAGCGAAATCATTTCCATAAAGTCGAACGGATT 1930667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629763569522640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |