Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7 116 5e-21 seq5 87.8 2e-12 >seq7 Length=809302 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250 || | ||||| ||||| | ||||||||||| Sbjct 287693 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 287660 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250 || | ||||| ||||| | ||||||||||| Sbjct 315457 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 315424 Score = 100 bits (110), Expect = 4e-16 Identities = 176/251 (70%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650 |||||| |||||||| ||||| || || ||| ||| || || ||||| || || Sbjct 314939 ATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTG 314880 Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 | || | | ||||| ||||| ||| | ||||| ||||||||||| || ||||| Sbjct 314879 TTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTT 314820 Query 62711 ATTTAG--ATCTTG-TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767 ||| | |||| | | |||| || | ||||| ||||| | | ||| || || || Sbjct 314819 ATTCAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATC 314763 Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTC 62827 ||| |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | Sbjct 314762 CGCCAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT- 314704 Query 62828 TGGAATAGGAT 62838 ||| ||||| Sbjct 314703 --GAAAAGGAT 314695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||| |||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 315215 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 315156 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 315155 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 315096 Query 62507 ACTATTTCTAAGACCGTA 62524 |||||| ||||| || Sbjct 315095 CGAATTTCTCAGACCATA 315078 >seq5 Length=5663831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||| ||||| Sbjct 1930759 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 1930700 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || || ||||||| || || |||||||| Sbjct 1930699 CAGCGAAATCATTTCCATAAAGTCGAACGGATT 1930667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763569522640