Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 >seq7 Length=809302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| | ||||| || ||||||| ||| ||||| |||||| Sbjct 287870 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 287811 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||| |||| ||||| |||||||| |||| ||| || || | || | Sbjct 287810 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 287751 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 |||| | || ||| || || ||| || || || || || || ||||| ||||| Sbjct 287750 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 287691 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 |||| | |||||||| || || ||||||||||| || || Sbjct 287690 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 287650 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| |||| | ||||| || ||||||| ||| ||||| |||||| Sbjct 315634 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 315575 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||| |||| ||||| |||||||| |||| ||| || || | || | Sbjct 315574 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 315515 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 |||| | || ||| || || ||| || || || || || || ||||| ||||| Sbjct 315514 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 315455 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 |||| | |||||||| || || ||||||||||| || || Sbjct 315454 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 315414 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351 ||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || |||| Sbjct 313679 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 313620 Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411 ||||| || ||||| || |||| | | ||||||||| || || ||| || Sbjct 313619 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 313561 Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470 | || || || || || | ||||| || || ||| ||||||||||||| |||| ||| Sbjct 313560 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 313501 Query 38471 TATATGT 38477 |||| || Sbjct 313500 TATAAGT 313494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468484606428720