Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq7 96.9 3e-15
>seq7
Length=809302
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| |||| | ||||| || ||||||| ||| ||||| ||||||
Sbjct 287870 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 287811
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || ||| |||| ||||| |||||||| |||| ||| || || | || |
Sbjct 287810 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 287751
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
|||| | || ||| || || ||| || || || || || || ||||| |||||
Sbjct 287750 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 287691
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010
|||| | |||||||| || || ||||||||||| || ||
Sbjct 287690 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 287650
Score = 96.9 bits (106), Expect = 3e-15
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || ||||||| |||| | ||||| || ||||||| ||| ||||| ||||||
Sbjct 315634 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 315575
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || ||| |||| ||||| |||||||| |||| ||| || || | || |
Sbjct 315574 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 315515
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
|||| | || ||| || || ||| || || || || || || ||||| |||||
Sbjct 315514 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 315455
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010
|||| | |||||||| || || ||||||||||| || ||
Sbjct 315454 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 315414
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 38292 CAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATAT 38351
||| ||||| ||||| ||| ||| ||||| | || |||| ||| || || || ||||
Sbjct 313679 CAAACCTATGCCACCGGCACTTTTCGATATAATCGCACATTCTTTCAATGTGTCGTATAT 313620
Query 38352 ACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGG 38411
||||| || ||||| || |||| | | ||||||||| || || ||| ||
Sbjct 313619 GCCTTCGATGCTGTCTGATTTCATTGTGATCAGAAAACAACTGCTCAACTGCGGCC-TGC 313561
Query 38412 A-GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAAT 38470
| || || || || || | ||||| || || ||| ||||||||||||| |||| |||
Sbjct 313560 ATGTACCAGCATTGAACAGCGTAGGCGAAGCGTGTGTGAACCATTTTTCTGACATCAAAT 313501
Query 38471 TATATGT 38477
|||| ||
Sbjct 313500 TATAAGT 313494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468484606428720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |