Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7 125 9e-24 seq5 87.8 2e-12 >seq7 Length=809302 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794 ||||| ||||| |||||||| | || ||||||| | | | ||||||| || ||| Sbjct 313058 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 312999 Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 312998 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 312939 Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 312938 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 312879 Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943 |||||||| || ||||| || || | ||| Sbjct 312878 TCCAATTCGACAGTTGTGACACCTTGATA 312850 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 || | ||||| ||||| | ||||||||||| Sbjct 287693 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 287660 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 || | ||||| ||||| | ||||||||||| Sbjct 315457 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 315424 Score = 104 bits (114), Expect = 3e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 || ||| ||| ||||| || ||||| | || |||||||||||||||| | || ||| Sbjct 314161 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCAC 314102 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 314101 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 314043 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 || ||| ||||||| | || | ||| ||| ||||| |||||||| Sbjct 314042 GGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTT 313992 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 315215 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 315156 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 315155 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 315096 Query 65300 ACTATTTCTAAGACCGTA 65317 |||||| ||||| || Sbjct 315095 CGAATTTCTCAGACCATA 315078 Score = 95.1 bits (104), Expect = 2e-14 Identities = 173/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 314936 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 314877 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 314876 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 314817 Query 65507 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563 | |||| | | |||| || | ||||| ||||| | | ||| || || || || Sbjct 314816 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATCCGC 314760 Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 314759 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 314703 Query 65624 AATAGGAT 65631 || ||||| Sbjct 314702 AAAAGGAT 314695 >seq5 Length=5663831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 1930759 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 1930700 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 | || || ||||||| || ||||| ||||| Sbjct 1930699 CAGCGAAATCATTTCCATAAAGTCGAACGGATT 1930667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658116337000920