Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq7 125 9e-24
seq5 87.8 2e-12
>seq7
Length=809302
Score = 125 bits (138), Expect = 9e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794
||||| ||||| |||||||| | || ||||||| | | | ||||||| || |||
Sbjct 313058 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 312999
Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 312998 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 312939
Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914
| | ||||| |||||||||| |||||| ||||| | ||||| || |||| | ||
Sbjct 312938 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 312879
Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943
|||||||| || ||||| || || | |||
Sbjct 312878 TCCAATTCGACAGTTGTGACACCTTGATA 312850
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 287873 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 287814
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 287813 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 287754
Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 287753 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 287694
Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043
|| | ||||| ||||| | |||||||||||
Sbjct 287693 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 287660
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
||||||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 315637 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 315578
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 315577 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 315518
Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009
|| ||||| || ||||||| || || ||| || ||||| |||||||| || || |||
Sbjct 315517 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCC 315458
Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043
|| | ||||| ||||| | |||||||||||
Sbjct 315457 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 315424
Score = 104 bits (114), Expect = 3e-17
Identities = 127/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032
|| ||| ||| ||||| || ||||| | || |||||||||||||||| | || |||
Sbjct 314161 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCAC 314102
Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 66091
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 314101 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 314043
Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142
|| ||| ||||||| | || | ||| ||| ||||| ||||||||
Sbjct 314042 GGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTT 313992
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 315215 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 315156
Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 315155 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 315096
Query 65300 ACTATTTCTAAGACCGTA 65317
|||||| ||||| ||
Sbjct 315095 CGAATTTCTCAGACCATA 315078
Score = 95.1 bits (104), Expect = 2e-14
Identities = 173/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Minus
Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 314936 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 314877
Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 314876 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 314817
Query 65507 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563
| |||| | | |||| || | ||||| ||||| | | ||| || || || ||
Sbjct 314816 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATGAAAGCATCCGC 314760
Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 314759 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 314703
Query 65624 AATAGGAT 65631
|| |||||
Sbjct 314702 AAAAGGAT 314695
>seq5
Length=5663831
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913
||| |||||| ||| |||||||| || || |||||||||||||| || |||||||||||
Sbjct 1930759 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 1930700
Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946
| || || ||||||| || ||||| |||||
Sbjct 1930699 CAGCGAAATCATTTCCATAAAGTCGAACGGATT 1930667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658116337000920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |