Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 5e-13 seq4763 82.4 8e-11 >seq1 Length=3447954 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| | || || || || ||||| || || |||||||||||||| || || Sbjct 888945 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 888886 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | ||| | ||| || | ||||| || |||| || | ||| || || |||| Sbjct 888885 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 888826 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||||||| || ||||||||||| Sbjct 888825 ACGTTTTCACAAATATTTGCAT 888804 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| | || || || || ||||| || || |||||||||||||| || || Sbjct 814573 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 814514 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | ||| | ||| || | ||||| || |||| || | ||| || || |||| Sbjct 814513 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 814454 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||||||| || ||||| ||||| Sbjct 814453 ACGTTTTCACAAATATCTGCAT 814432 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| | || || || || ||||| || || |||||||||||||| || || Sbjct 839519 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 839460 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | ||| | ||| || | ||||| || |||| || | ||| || || |||| Sbjct 839459 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 839400 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||||||| || ||||| ||||| Sbjct 839399 ACGTTTTCACAAATATCTGCAT 839378 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||||||| | || || || || ||||| || || |||||||||||||| || || Sbjct 849710 TACCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGC 849651 Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 ||||| | ||| | ||| || | ||||| || |||| || | ||| || || |||| Sbjct 849650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 849591 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 ||||||| || ||||| ||||| Sbjct 849590 ACGTTTTCACAAATATCTGCAT 849569 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | ||||||||||| |||||||| || || || ||||| || ||||| Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | |||||| | ||||||||| || | || | || || || ||| Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| ||||| Sbjct 849259 AGAGTTTTGACAAATATCTGCAT 849237 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | ||||||||||| |||||||| || || || ||||| || ||||| Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | |||||| | ||||||||| || | || | || || || ||| Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| ||||| Sbjct 888494 AGAGTTTTGACAAATATCTGCAT 888472 >seq4763 Length=1852 Score = 82.4 bits (90), Expect = 8e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | |||| ||||||||||| || || |||||||||||||| ||| |||| Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTC-TTGAATTTT 1677 Query 139682 TGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | | ||| | ||||| | ||||| ||||| | || | || || || || Sbjct 1678 ACTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGT 1737 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||| || || || ||||| Sbjct 1738 TAATGTTTTCACAAAAATCTGCAT 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496021443909600