Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq7 116 5e-21
>seq7
Length=809302
Score = 116 bits (128), Expect = 5e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898
||||||||| || ||||| ||||| |||| ||||| |||||||| || | |||
Sbjct 287826 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 287767
Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958
| ||| | || ||||||||||||||||||| |||||| ||| || ||||| |||||
Sbjct 287766 AGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCC 287707
Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005
||| || || ||||| | ||||| ||||| | |||||||||||
Sbjct 287706 CCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 287660
Score = 116 bits (128), Expect = 5e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898
||||||||| || ||||| ||||| |||| ||||| |||||||| || | |||
Sbjct 315590 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 315531
Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958
| ||| | || ||||||||||||||||||| |||||| ||| || ||||| |||||
Sbjct 315530 AGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCC 315471
Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005
||| || || ||||| | ||||| ||||| | |||||||||||
Sbjct 315470 CCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 315424
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||||||||||||||| || | || | |||||| || | ||| || |||| ||| ||
Sbjct 315215 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 315156
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| |
Sbjct 315155 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 315096
Query 71262 ACTATTTCTAAGACCAT 71278
|||||| |||||||
Sbjct 315095 CGAATTTCTCAGACCAT 315079
Score = 91.5 bits (100), Expect = 2e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994
|||||| ||| ||||| || ||||| || | |||||||||||||| | || |||
Sbjct 314161 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGGGCAC 314102
Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054
|||| |||||| ||||| || | | | || ||||| || |||||||| ||||| ||
Sbjct 314101 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 314042
Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114
|| ||| | ||||| | || | || ||| ||||| |||||||| || ||
Sbjct 314041 GCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 313982
Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149
|| | | || || | ||||| |||||||| ||
Sbjct 313981 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 313947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671081624645880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |