Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq7 102 1e-16
>seq7
Length=809302
Score = 102 bits (112), Expect = 1e-16
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA--A 96963
|| ||||| ||||||||||||||||| ||| | ||||| || || || ||| ||| |
Sbjct 313941 GCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGA--TTTTCTTGACGCGAAAAAGA 313998
Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023
|| | ||| | ||||| ||||| | || |||||||| || |||||| | || |||
Sbjct 313999 ACACAGGCGTCGAAGAAAACCGAGCGCGAGATTTGTTTTACGCCCTCTGGATACCTGATC 314058
Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083
| |||||||||||| | | | || || | ||| || |||||||| || | |
Sbjct 314059 TATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCACGAATGTC 314118
Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117
| || || | |||| |||||||| ||||||||
Sbjct 314119 CTGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 314152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740995626383880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |