Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7 102 1e-16 >seq7 Length=809302 Score = 102 bits (112), Expect = 1e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA--A 96963 || ||||| ||||||||||||||||| ||| | ||||| || || || ||| ||| | Sbjct 313941 GCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGA--TTTTCTTGACGCGAAAAAGA 313998 Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023 || | ||| | ||||| ||||| | || |||||||| || |||||| | || ||| Sbjct 313999 ACACAGGCGTCGAAGAAAACCGAGCGCGAGATTTGTTTTACGCCCTCTGGATACCTGATC 314058 Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083 | |||||||||||| | | | || || | ||| || |||||||| || | | Sbjct 314059 TATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCACGAATGTC 314118 Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 | || || | |||| |||||||| |||||||| Sbjct 314119 CTGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 314152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995626383880