Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1 111 1e-19
seq5152 89.7 4e-13
seq4763 82.4 6e-11
>seq1
Length=3447954
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|||| || ||||| |||||||||||||||| || |||||||||||| || ||
Sbjct 793168 AATTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 793109
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||||| ||||||| | ||||| ||||| ||| || || ||||| || |||||
Sbjct 793108 ATTTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTG 793049
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||||||||||||
Sbjct 793048 CCGGTAAGAGTCTTAACAAAAATTTGCAT 793020
Score = 109 bits (120), Expect = 4e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||||||||||||| || ||||||||| ||||| || |||||||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| || ||| ||||||||||||| |||||| || ||||| || ||||| || ||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||||||||||||
Sbjct 786963 AGGGTCTTAACAAAAATTTGCAT 786941
Score = 109 bits (120), Expect = 4e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || ||||||||||||||| || ||||||||
Sbjct 798687 CCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 798628
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| ||||||| ||||| ||| || || ||||| || ||||| || || |||
Sbjct 798627 TTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 798568
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 798567 GTCTTAACAAAAATTTGCAT 798548
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || ||||||||||| || || ||||||| |
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 786670 GTCTTAACAAAAATTTGCAT 786651
Score = 102 bits (112), Expect = 6e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| || || ||||| | |||||||||||||| || ||||||||| ||||| || |
Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||||| || ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||||||||||||
Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCAT 850202
Score = 100 bits (110), Expect = 2e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||| || || ||||| | |||||||| ||||| || ||||||||| ||||| ||
Sbjct 889586 TAACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 889527
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|||||||| || ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 889526 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 889467
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || ||||||||||||||
Sbjct 889466 TCCAGTAAGGGTCTTAACAAAAATTTGCAT 889437
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || ||||||||||| || || ||||||| |
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| ||| || || ||||| || ||||| || || ||
Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 787238 GTCTTAACAAAAATTTGCAT 787219
Score = 95.1 bits (104), Expect = 9e-15
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||| ||||| || |||||||
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| ||||||| ||||| |||||| || ||||| |||||||| || || ||
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 840030 GTCTTAACAAAAATTTGCAT 840011
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| || || || || || || | ||||||||||| || |||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTT 849234
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| || || || || || || | ||||||||||| || |||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTT 888469
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| ||||||||| || |||||||||||| || || ||||| |
Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || || ||||| || ||||| || || |||
Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 816426
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 816425 GTCTTAACAAAAATTTGCAT 816406
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/142 (75%), Gaps = 3/142 (2%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| |||||||||||||||| || |||||| |||||||| || ||||||| |
Sbjct 758408 CCAGCAAATATCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCCTGTATTTTGCCC 758349
Query 15284 TTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342
|||||| | ||||| ||||| | | | || || || | || || ||||| || | |
Sbjct 758348 TTTACATTCTCTATCGTATCAGATGGTATCCACTTCCCACGTGATCGTTTTGCCGGGTA- 758290
Query 15343 AGTTTTTACAAA-AATTTGCAT 15363
|| | ||||||| |||||||||
Sbjct 758289 AGGTCTTACAAAGAATTTGCAT 758268
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||| ||||| ||| ||||||||| ||||| || ||||||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| || ||| |||| || | || ||| || || | ||||||||||| || |||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| ||||||| ||||| || || |||||| ||||||||||| ||||||
Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|| || || |||| || ||||| ||||| || || || || ||||| || ||
Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012
Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364
| ||||| |||||||| ||||||
Sbjct 864011 AATGTTTTCACAAAAATCTGCATA 863988
Score = 82.4 bits (90), Expect = 6e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||| || || ||||| | |||||||||||||| || ||||||||| ||||| ||
Sbjct 792886 TAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 792827
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|||||||| || ||| ||||||| ||||| |||||| || ||||| || |||||
Sbjct 792826 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 792767
>seq5152
Length=332
Score = 89.7 bits (98), Expect = 4e-13
Identities = 107/143 (75%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||||||||||||| || ||||||||| ||||| || |||||||
Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| || ||| ||||||| ||||| |||||| || ||||| || |||| || ||
Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGAT-CTTTTGCC-GTG 304
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
| || || ||||||||||||||
Sbjct 305 AAGGTCTTAACAAAAATTTGCAT 327
>seq4763
Length=1852
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| ||||||| ||||| || || |||||| ||||||||||| ||||||
Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|| || || |||| || || || | ||||| || || || || ||||| || ||
Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
| ||||| |||||||| |||||
Sbjct 1739 AATGTTTTCACAAAAATCTGCAT 1761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362148906313083
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