Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq5152 89.7 4e-13 seq4763 82.4 6e-11 >seq1 Length=3447954 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||| || ||||| |||||||||||||||| || |||||||||||| || || Sbjct 793168 AATTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 793109 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||||| ||||||| | ||||| ||||| ||| || || ||||| || ||||| Sbjct 793108 ATTTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTG 793049 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || |||||||||||||| Sbjct 793048 CCGGTAAGAGTCTTAACAAAAATTTGCAT 793020 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || ||||||||| ||||| || ||||||| Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || ||| ||||||||||||| |||||| || ||||| || ||||| || || Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||||||||| Sbjct 786963 AGGGTCTTAACAAAAATTTGCAT 786941 Score = 109 bits (120), Expect = 4e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||||||||||||| || ||||||||||||||| || |||||||| Sbjct 798687 CCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 798628 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| ||||||| ||||| ||| || || ||||| || ||||| || || ||| Sbjct 798627 TTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 798568 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 798567 GTCTTAACAAAAATTTGCAT 798548 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||||||||||||| || ||||||||||| || || ||||||| | Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 786670 GTCTTAACAAAAATTTGCAT 786651 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || ||||| | |||||||||||||| || ||||||||| ||||| || | Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||||| || ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||||||||| Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCAT 850202 Score = 100 bits (110), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| || || ||||| | |||||||| ||||| || ||||||||| ||||| || Sbjct 889586 TAACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 889527 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||||| || ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 889526 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 889467 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||||||||| Sbjct 889466 TCCAGTAAGGGTCTTAACAAAAATTTGCAT 889437 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||||||||||||| || ||||||||||| || || ||||||| | Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| ||| || || ||||| || ||||| || || || Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 787238 GTCTTAACAAAAATTTGCAT 787219 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || ||||||||| ||||| || ||||||| Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| ||||||| ||||| |||||| || ||||| |||||||| || || || Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 840030 GTCTTAACAAAAATTTGCAT 840011 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||||||||| ||| ||||||||| ||||| || |||||| Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||| ||| |||| || || || || || || | ||||||||||| || ||| Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| ||||| || ||||| || Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTT 849234 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||||||||| ||| ||||||||| ||||| || |||||| Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||| ||| |||| || || || || || || | ||||||||||| || ||| Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| ||||| || ||||| || Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTT 888469 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| ||||||||| || |||||||||||| || || ||||| | Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || || ||||| || ||||| || || ||| Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 816426 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 816425 GTCTTAACAAAAATTTGCAT 816406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| |||||||||||||||| || |||||| |||||||| || ||||||| | Sbjct 758408 CCAGCAAATATCAAACGTTGTTGATCCGGTGGAATACCTTCTTTATCCTGTATTTTGCCC 758349 Query 15284 TTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAG 15342 |||||| | ||||| ||||| | | | || || || | || || ||||| || | | Sbjct 758348 TTTACATTCTCTATCGTATCAGATGGTATCCACTTCCCACGTGATCGTTTTGCCGGGTA- 758290 Query 15343 AGTTTTTACAAA-AATTTGCAT 15363 || | ||||||| ||||||||| Sbjct 758289 AGGTCTTACAAAGAATTTGCAT 758268 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||| ||||| ||| ||||||||| ||||| || |||||| Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || ||| |||| || | || ||| || || | ||||||||||| || ||| Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| ||||| || ||||| || Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||| ||||| || || |||||| ||||||||||| |||||| Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || || |||| || ||||| ||||| || || || || ||||| || || Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| |||||||| |||||| Sbjct 864011 AATGTTTTCACAAAAATCTGCATA 863988 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| || || ||||| | |||||||||||||| || ||||||||| ||||| || Sbjct 792886 TAACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 792827 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||||| || ||| ||||||| ||||| |||||| || ||||| || ||||| Sbjct 792826 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 792767 >seq5152 Length=332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || ||||||||| ||||| || ||||||| Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || ||| ||||||| ||||| |||||| || ||||| || |||| || || Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGAT-CTTTTGCC-GTG 304 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || |||||||||||||| Sbjct 305 AAGGTCTTAACAAAAATTTGCAT 327 >seq4763 Length=1852 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||| ||||| || || |||||| ||||||||||| |||||| Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || || |||| || || || | ||||| || || || || ||||| || || Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| |||||||| ||||| Sbjct 1739 AATGTTTTCACAAAAATCTGCAT 1761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362148906313083