Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 1e-12
seq3072 86.0 4e-12
seq4763 82.4 5e-11
seq3435 82.4 5e-11
>seq1
Length=3447954
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038
|| || ||||||||||| |||||||| || | || | |||||||| ||| ||||||
Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072
Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098
||| || | ||| ||||| | ||||| || || | || |||||||| || |||
Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012
Query 44099 AAAGTCTTCACAAATATTTGCAT 44121
|| || |||||||| || |||||
Sbjct 864011 AATGTTTTCACAAAAATCTGCAT 863989
>seq3072
Length=446
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 235 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 176
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| ||||| | ||||| || || | || |||||||| || |||||
Sbjct 175 TTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 116
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| |||||||| || |||||
Sbjct 115 GTTTTCACAAAAATCTGCAT 96
>seq4763
Length=1852
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038
|| || ||||||||||| |||||||| || | || | |||||||| ||| ||||||
Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678
Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098
||| || | ||| || || | ||||| || || | || |||||||| || |||
Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738
Query 44099 AAAGTCTTCACAAATATTTGCAT 44121
|| || |||||||| || |||||
Sbjct 1739 AATGTTTTCACAAAAATCTGCAT 1761
>seq3435
Length=827
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041
|| ||||||||||| |||||||| || | || | ||||| |||||| |||||| |
Sbjct 446 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 505
Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101
|| || | ||| || |||| ||||| || || | || |||||||| || |||||
Sbjct 506 TTCACATTTTCAATCGTGTCTGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAAT 565
Query 44102 GTCTTCACAAATATTTGCAT 44121
|| ||||| || || |||||
Sbjct 566 GTTTTCACGAAAATCTGCAT 585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354747925403724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |