Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq3072 86.0 4e-12 seq4763 82.4 5e-11 seq3435 82.4 5e-11 >seq1 Length=3447954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||||||||| |||||||| || | || | |||||||| ||| |||||| Sbjct 864131 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 864072 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || | ||| ||||| | ||||| || || | || |||||||| || ||| Sbjct 864071 CTTTTCACGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 864012 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || ||||| Sbjct 864011 AATGTTTTCACAAAAATCTGCAT 863989 >seq3072 Length=446 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||||||||| |||||||| || | || | ||||| |||||| |||||| | Sbjct 235 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 176 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| ||||| | ||||| || || | || |||||||| || ||||| Sbjct 175 TTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 116 Query 44102 GTCTTCACAAATATTTGCAT 44121 || |||||||| || ||||| Sbjct 115 GTTTTCACAAAAATCTGCAT 96 >seq4763 Length=1852 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||||||||| |||||||| || | || | |||||||| ||| |||||| Sbjct 1619 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTA 1678 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||| || | ||| || || | ||||| || || | || |||||||| || ||| Sbjct 1679 CTTTTCACGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 1738 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| || ||||| Sbjct 1739 AATGTTTTCACAAAAATCTGCAT 1761 >seq3435 Length=827 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||||||||| |||||||| || | || | ||||| |||||| |||||| | Sbjct 446 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 505 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || | ||| || |||| ||||| || || | || |||||||| || ||||| Sbjct 506 TTCACATTTTCAATCGTGTCTGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAAT 565 Query 44102 GTCTTCACAAATATTTGCAT 44121 || ||||| || || ||||| Sbjct 566 GTTTTCACGAAAATCTGCAT 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354747925403724