Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 123 6e-23 seq3296 109 1e-18 seq3791 86.0 1e-11 >seq1 Length=3447954 Score = 123 bits (136), Expect = 6e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | ||||||||| || || ||||| |||||||||||||| || Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||| |||||||| | | || ||||| || || || ||||| || || ||||| Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||||||||| Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| ||||||||||| | Sbjct 814571 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 814512 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 814511 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 814452 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 814451 GTTTTCACAAATATCTGCAT 814432 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||||| || || ||||| |||||||||||||| || Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || |||||||| | || || || || || || |||||||| || || ||||| Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||||||||| Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTTG 849233 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| ||||||||||| | Sbjct 849708 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 849649 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 849648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 849589 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 849588 GTTTTCACAAATATCTGCAT 849569 Score = 122 bits (134), Expect = 2e-22 Identities = 115/144 (80%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| |||| || || ||||||||||| || ||||| ||||||||||| ||| Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 863390 Query 104477 GCTTTTA-CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||| |||| || | ||| || ||||| || |||||||| ||||| || ||||| Sbjct 863389 ACTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 863330 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || ||||||||||| Sbjct 863329 AAGTGTCTTCACGAATATCTGCAT 863306 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||||| || || ||||| |||||||||||||| || Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || |||||||| | || || || || || || |||||||| || || ||||| Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||||||||| Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTTG 888468 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| || |||||||| | Sbjct 839517 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 839458 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 839457 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 839398 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 839397 GTTTTCACAAATATCTGCAT 839378 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| ||||||||||| | Sbjct 888943 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 888884 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 888883 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 888824 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||| ||||| Sbjct 888823 GTTTTCACAAATATTTGCAT 888804 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| || | ||| ||||| || || ||||| |||||||||||||| || Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||| |||||||| | | || ||||| || || || ||||| || || ||||| Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||||||||| Sbjct 814122 AGAGTTTTGACAAATATCTGCATTTT 814097 Score = 113 bits (124), Expect = 1e-19 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | ||||||||| || || ||||| |||||||| ||||| Sbjct 889582 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 889523 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || |||| |||||||||| ||||| |||||||| || | || || || || ||| Sbjct 889522 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 889463 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || ||||| || |||||| Sbjct 889462 GTAAGGGTCTTAACAAAAATTTGCATT 889436 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || |||| |||||||||| ||||| |||||||| || | || || || || ||| Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 850228 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || ||||| || |||||| Sbjct 850227 GTAAGGGTCTTAACAAAAATTTGCATT 850201 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||||||||| ||||| |||||||| |||||||| || Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || || ||||| ||||| || || | || || || || ||||| || Sbjct 758636 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 758577 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 758576 GTCTTAACAAAAATTTGCATT 758556 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| ||||| ||||| |||||||| |||||||| || Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || || ||||| ||||| || || | || || || || ||||| || Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 793328 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 793327 GTCTTAACAAAAATTTGCATT 793307 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| || Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||| |||||||||| |||||| |||||||| || | || || || || || || Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| || |||||| Sbjct 786963 AGGGTCTTAACAAAAATTTGCATT 786940 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 104419 TCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC 104478 |||||| ||||| | | |||||||| || || |||||||||||||| ||||| || | Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629 Query 104479 TTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||| |||||||||| ||||| ||||| || || | || || || || || ||||| Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 798569 Query 104539 TGTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 798568 AGTCTTAACAAAAATTTGCATT 798547 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | |||||||| || || |||||||| |||||||| || || || Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| ||||| || || | || || || || || ||||| Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 816426 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 816425 GTCTTAACAAAAATTTGCATT 816405 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || ||||| ||||||||||| || || || Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||||| ||||| |||||||| || | || || || || || || || Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 840030 GTCTTAACAAAAATTTGCATT 840010 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | |||||||| || || |||||||| |||||||| || || | Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| || | || || || || || || || Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 786670 GTCTTAACAAAAATTTGCATT 786650 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | |||||||| || || |||||||| |||||||| || || | Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| ||||| || || | || || || || || ||||| Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 787238 GTCTTAACAAAAATTTGCATT 787218 >seq3296 Length=842 Score = 109 bits (120), Expect = 1e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| | || || || ||||||||||| || ||||| ||||||||||| ||| Sbjct 407 TTACCTGCAAAGACTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 465 Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| ||||| || | ||| || ||||| || |||||||| ||||| || ||||| Sbjct 466 ACTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 525 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || ||||| |||| Sbjct 526 AAGTGTCTTCACGAATATAAGCAT 549 >seq3791 Length=500 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | || ||||| || || |||||||| |||||||| || || || Sbjct 293 CCAGCAAAAATCACACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 352 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| |||| ||||| || ||||| ||| |||| || || || || ||||| Sbjct 353 TTCACATTCTCTATTGTATCAGATGGCTCTACTTCTTGTGTGATCGTTTTGCCGGTAAGA 412 Query 104540 GTTTTTACA-AATATCTGCATT 104560 || || ||| || | |||||| Sbjct 413 GTCTTAACACAAATTTTGCATT 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151297155020004