Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 6e-23
seq3296 109 1e-18
seq3791 86.0 1e-11
>seq1
Length=3447954
Score = 123 bits (136), Expect = 6e-23
Identities = 115/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | ||||||||| || || ||||| |||||||||||||| ||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| |||||||| | | || ||||| || || || ||||| || || |||||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||||||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| ||||||||||| |
Sbjct 814571 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 814512
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 814511 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 814452
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 814451 GTTTTCACAAATATCTGCAT 814432
Score = 122 bits (134), Expect = 2e-22
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || || || || || |||||||| || || |||||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
|| ||||| ||||||||||||||||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTTG 849233
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| ||||||||||| |
Sbjct 849708 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 849649
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 849648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 849589
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 849588 GTTTTCACAAATATCTGCAT 849569
Score = 122 bits (134), Expect = 2e-22
Identities = 115/144 (80%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| |||| || || ||||||||||| || ||||| ||||||||||| |||
Sbjct 863448 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 863390
Query 104477 GCTTTTA-CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|||||| |||| || | ||| || ||||| || |||||||| ||||| || |||||
Sbjct 863389 ACTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 863330
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
|||||| || || |||||||||||
Sbjct 863329 AAGTGTCTTCACGAATATCTGCAT 863306
Score = 122 bits (134), Expect = 2e-22
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | |||||||| || || ||||| |||||||||||||| ||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || |||||||| | || || || || || || |||||||| || || |||||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
|| ||||| ||||||||||||||||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTTG 888468
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| || |||||||| |
Sbjct 839517 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 839458
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 839457 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 839398
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| ||||||||||||||
Sbjct 839397 GTTTTCACAAATATCTGCAT 839378
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| |||| ||||||||| || || || |||||||| ||||||||||| |
Sbjct 888943 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTT 888884
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
||||||||||| | ||||| || || || || |||||||| || || || || |
Sbjct 888883 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 888824
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| |||||||| |||||
Sbjct 888823 GTTTTCACAAATATTTGCAT 888804
Score = 114 bits (126), Expect = 3e-20
Identities = 113/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || |||||||| || | ||| ||||| || || ||||| |||||||||||||| ||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| |||||||| | | || ||||| || || || ||||| || || |||||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562
|| ||||| |||||||||||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCATTTT 814097
Score = 113 bits (124), Expect = 1e-19
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | ||||||||| || || ||||| |||||||| |||||
Sbjct 889582 TGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 889523
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 889522 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 889463
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || ||||| || ||||||
Sbjct 889462 GTAAGGGTCTTAACAAAAATTTGCATT 889436
Score = 107 bits (118), Expect = 4e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||||||||| | | |||||||| || || ||||| |||||||| |||||
Sbjct 850347 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 850288
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| |||| |||||||||| ||||| |||||||| || | || || || || |||
Sbjct 850287 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 850228
Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560
||||| || || ||||| || ||||||
Sbjct 850227 GTAAGGGTCTTAACAAAAATTTGCATT 850201
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||||||||| ||||| |||||||| |||||||| ||
Sbjct 758696 CCAGCAAAAATCAGACGTTGCTGATCAGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 758637
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| || || ||||| ||||| || || | || || || || ||||| ||
Sbjct 758636 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 758577
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 758576 GTCTTAACAAAAATTTGCATT 758556
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| ||||| ||||| |||||||| |||||||| ||
Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| || || ||||| ||||| || || | || || || || ||||| ||
Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 793328
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 793327 GTCTTAACAAAAATTTGCATT 793307
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| | | |||||||| || || ||||| |||||||| ||||| ||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|||| |||||||||| |||||| |||||||| || | || || || || || ||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964
Query 104537 AGTGTTTTTACAAATATCTGCATT 104560
|| || || ||||| || ||||||
Sbjct 786963 AGGGTCTTAACAAAAATTTGCATT 786940
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 104419 TCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC 104478
|||||| ||||| | | |||||||| || || |||||||||||||| ||||| || |
Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629
Query 104479 TTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538
||| |||||||||| ||||| ||||| || || | || || || || || |||||
Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 798569
Query 104539 TGTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 798568 AGTCTTAACAAAAATTTGCATT 798547
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | |||||||| || || |||||||| |||||||| || || ||
Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||| | ||||| ||||| || || | || || || || || |||||
Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 816426
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 816425 GTCTTAACAAAAATTTGCATT 816405
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| || | || ||||| || || ||||| ||||||||||| || || ||
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| |||||||||| ||||| |||||||| || | || || || || || || ||
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 840030 GTCTTAACAAAAATTTGCATT 840010
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | |||||||| || || |||||||| |||||||| || || |
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| |||||||| || | || || || || || || ||
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 786670 GTCTTAACAAAAATTTGCATT 786650
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | |||||||| || || |||||||| |||||||| || || |
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|||||||| |||| ||||| ||||| || || | || || || || || |||||
Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239
Query 104540 GTTTTTACAAATATCTGCATT 104560
|| || ||||| || ||||||
Sbjct 787238 GTCTTAACAAAAATTTGCATT 787218
>seq3296
Length=842
Score = 109 bits (120), Expect = 1e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || ||||| | || || || ||||||||||| || ||||| ||||||||||| |||
Sbjct 407 TTACCTGCAAAGACTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 465
Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| ||||| || | ||| || ||||| || |||||||| ||||| || |||||
Sbjct 466 ACTTTTAACATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 525
Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559
|||||| || || ||||| ||||
Sbjct 526 AAGTGTCTTCACGAATATAAGCAT 549
>seq3791
Length=500
Score = 86.0 bits (94), Expect = 1e-11
Identities = 105/142 (74%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
||||||||||| | | || ||||| || || |||||||| |||||||| || || ||
Sbjct 293 CCAGCAAAAATCACACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 352
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| ||||| |||| ||||| || ||||| ||| |||| || || || || |||||
Sbjct 353 TTCACATTCTCTATTGTATCAGATGGCTCTACTTCTTGTGTGATCGTTTTGCCGGTAAGA 412
Query 104540 GTTTTTACA-AATATCTGCATT 104560
|| || ||| || | ||||||
Sbjct 413 GTCTTAACACAAATTTTGCATT 434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151297155020004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |