Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq4 98.7 9e-16
>seq4
Length=12041450
Score = 98.7 bits (108), Expect = 9e-16
Identities = 187/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562
||| ||||| ||||||||| ||| || | |||||| | ||| || | | | |||||
Sbjct 7642383 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCCGTGTTGTCAAG--ATGAGAT-TCTTC 7642439
Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618
||| | || || || || || || ||||| || || ||||| || || ||| |
Sbjct 7642440 GACAATATTTGGCAAAGCGATTCGTTCACATATCAGTTGAGCAATTCGATCACCACGT-T 7642498
Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678
| || | ||||| | || ||| || ||||| | | || || || ||||| | ||| |
Sbjct 7642499 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAAT 7642558
Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738
| || |||| ||||||||||| | ||||||| |||||| | |||| ||| || || |
Sbjct 7642559 CTGCATCTACAACGCCCGCGCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAG 7642618
Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768
| || | ||| || ||||| || | ||||
Sbjct 7642619 GTGCAATGCGACCATAGCAGCCGACAGGAA 7642648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430018429040456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |