Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 9e-16 >seq4 Length=12041450 Score = 98.7 bits (108), Expect = 9e-16 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||||||| ||| || | |||||| | ||| || | | | ||||| Sbjct 7642383 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCCGTGTTGTCAAG--ATGAGAT-TCTTC 7642439 Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618 ||| | || || || || || || ||||| || || ||||| || || ||| | Sbjct 7642440 GACAATATTTGGCAAAGCGATTCGTTCACATATCAGTTGAGCAATTCGATCACCACGT-T 7642498 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || | ||||| | || ||| || ||||| | | || || || ||||| | ||| | Sbjct 7642499 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAAT 7642558 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 | || |||| ||||||||||| | ||||||| |||||| | |||| ||| || || | Sbjct 7642559 CTGCATCTACAACGCCCGCGCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAG 7642618 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768 | || | ||| || ||||| || | |||| Sbjct 7642619 GTGCAATGCGACCATAGCAGCCGACAGGAA 7642648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430018429040456