Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1 93.3 4e-14
seq4763 87.8 2e-12
>seq1
Length=3447954
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||||||||||||||||||||| |||||||| ||||| || || | |||||| || |
Sbjct 863441 CAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTACTTTTAA 863382
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| ||| ||||| | | || || || | || || |||||||||||||| || |
Sbjct 863381 CATTCTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTAAGTGTCT 863322
Query 94992 TCACAAAGATCTGCAT 95007
|||| || ||||||||
Sbjct 863321 TCACGAATATCTGCAT 863306
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||| || |||| ||||||||| || ||||| ||||||||||| | |||||| || |
Sbjct 864124 CAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTACTTTTCA 864065
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | || |||| | || || || | ||||| ||||||||||| | ||||
Sbjct 864064 CGTTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTT 864005
Query 94992 TCACAAAGATCTGCAT 95007
||||||| ||||||||
Sbjct 864004 TCACAAAAATCTGCAT 863989
>seq4763
Length=1852
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||| || |||| ||||||||| || ||||| ||||||||||| | |||||| || |
Sbjct 1626 CAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTACTTTTCA 1685
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
|| | | ||||| | | || || || | ||||| ||||||||||| | ||||
Sbjct 1686 CGTTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAATGTTT 1745
Query 94992 TCACAAAGATCTGCAT 95007
||||||| ||||||||
Sbjct 1746 TCACAAAAATCTGCAT 1761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448252742218680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |