Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 196 8e-46 seq3439 170 3e-38 seq4 156 7e-34 seq2 154 2e-33 >seq1 Length=3447954 Score = 196 bits (216), Expect = 8e-46 Identities = 207/273 (76%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || || Sbjct 226916 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCTGCGAT 226857 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||||||||| || |||||| || || ||| | |||||||| | Sbjct 226856 TCGACGATTGGCACGTCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 226797 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| ||| Sbjct 226796 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 226737 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | || ||||| || | |||||| | || ||||| |||||| | ||||| Sbjct 226736 ACACGCTAAGAGGAAAACTGTTACAGCTATGGATGTTGTTTATGCGTTGAAAAGACAAGG 226677 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||| | |||||||| || || |||||| ||| Sbjct 226676 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 226644 Score = 138 bits (152), Expect = 2e-28 Identities = 195/273 (71%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||| || |||||||| || || || || Sbjct 1808602 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 1808543 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| || ||||||||||| || || | || ||| | |||||||| | | Sbjct 1808542 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGCTTGATTTATGAAGAAACT 1808483 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||||| ||| ||| | | |||||| || ||| ||| Sbjct 1808482 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 1808423 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | ||||| ||||| | |||||| | || ||||| |||||| | ||||| Sbjct 1808422 CATGCGAAAAGGAAGACCGTCACGGCAATGGATGTAGTATATGCGTTGAAAAGACAAGGG 1808363 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704 || | || |||||||| || ||||| ||||| Sbjct 1808362 CGAACCATCTATGGTTTCGGTGGTTAACTCTTC 1808330 >seq3439 Length=759 Score = 170 bits (188), Expect = 3e-38 Identities = 203/274 (74%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | |||||| |||||||||||||||||||| ||||| || || Sbjct 52 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACAAAGCCTGCGAT 111 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||||||||| || |||||| || || ||| | |||||||| | Sbjct 112 TCGACGATTGGCACGTCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 171 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| ||| Sbjct 172 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 231 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCAT-GGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| | || ||||| || | || || | ||||| |||||| | |||| Sbjct 232 ACACGCTAAGAGGAAAACTGTTCCCCCTATGGGGGGGGGGTTATGCGTTGAAAAGACAAG 291 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 |||| | |||||||| || || |||||| ||| Sbjct 292 GCCGAACCATTTATGGATTCGGTGGTTAATTTTC 325 >seq4 Length=12041450 Score = 156 bits (172), Expect = 7e-34 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | | | || |||||||| ||||||||||| || ||||| || Sbjct 9285913 GCAAAACGCCATCGCAAAGTTTTGCGTGATAACATTCAAGGAATCACGAAACCAGCAATT 9285972 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| |||||||| || ||||| || || ||| | |||||||| | | Sbjct 9285973 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATTTATGAAGAAACT 9286032 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | || || | | || | | |||||| || ||| || Sbjct 9286033 CGAGCTGTGTTGAAAACTTTTCTTGAAAATATTGTTCGAGATGCTGTCACCTACTGTGAA 9286092 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | || ||||| ||| | |||||| | ||||||||||||||| | ||||| Sbjct 9286093 CATGCCAAAAGAAAAACTGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGGT 9286152 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | |||||||||||||| |||||| || Sbjct 9286153 CGAACCATTTATGGTTTTGGTGGTTAATTTT 9286183 >seq2 Length=11347909 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||| | | | | | || ||||| || |||||||| || || ||||| || Sbjct 10622653 GCTAAGCGTCATAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAACCAGCAATT 10622712 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||||||||||| || |||||| | || || || | |||||||||| Sbjct 10622713 CGGCGTTTGGCTCGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 10622772 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||| || | | | |||| | | |||||| | ||| ||| Sbjct 10622773 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 10622832 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || |||||||||||||| || | |||||| | || ||||| | |||||||||||| Sbjct 10622833 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 10622892 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||| || || || Sbjct 10622893 CGAACTATTTACGGCTTCGG 10622912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068925111059