Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 84.2 2e-11 >seq5 Length=5663831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CC 21585 || || ||||||||||| | || | |||||| ||||| || |||||||| || ||| || Sbjct 1930247 AACGTCAAACCGGGCATCAGGCCGCGCTTTTTCAACCAGAAAATTGACGCGAA-GCTGCC 1930189 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 |||||||||||||| ||||| || || || || || || ||||| Sbjct 1930188 GGAAAAGAAAATGCCTTCAACAGCTGCGAACGCGACCAAACGTTC 1930144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531855169560120