Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 >seq7 Length=809302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||||||||||||||| | | |||| || |||||||||||||||||||| || ||||| Sbjct 287868 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 287809 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATT 147229 | |||||| | ||| ||| || || |||| || ||| ||| | || | Sbjct 287808 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAA---TTTAGCATAATTCGGCTC 287752 Query 147230 GGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289 ||| | || ||| | ||| ||| || || ||| | | ||||| || |||||||| Sbjct 287751 GGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCAT 287692 Query 147290 GTCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTG 147329 ||| | || |||||| |||||||||| | |||||| Sbjct 287691 GTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 287652 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||||||||||||||| | | |||| || |||||||||||||||||||| || ||||| Sbjct 315632 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 315573 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATT 147229 | |||||| | ||| ||| || || |||| || ||| ||| | || | Sbjct 315572 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAA---TTTAGCATAATTCGGCTC 315516 Query 147230 GGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289 ||| | || ||| | ||| ||| || || ||| | | ||||| || |||||||| Sbjct 315515 GGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCAT 315456 Query 147290 GTCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTG 147329 ||| | || |||||| |||||||||| | |||||| Sbjct 315455 GTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 315416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478621336749360