Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 132 1e-25 seq7 84.2 6e-11 >seq2 Length=11347909 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373 |||||| ||||| |||||||| || | ||||| ||| | ||||||||||| || || Sbjct 4765605 TTTTCCGCTTCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTCGAAGAACTGCTTTG 4765546 Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433 ||| || | ||||| || ||||| || | ||| ||| || ||||| || |||||||| Sbjct 4765545 GTTCATCAGTGGAAGCACCAATGCTAAACAGCTTTCAGAGAAGAATGTCAACATTTGGGA 4765486 Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTTGTCGACAACGAAGAAGGT 111491 ||||||| || | || || ||||| |||| || || | | | ||||||||| Sbjct 4765485 TGGAAATTCTTCCAGAGAATTCCTAGA--CAGTAGAGGACTGTACAATTATGAAGAAGGT 4765428 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532 ||| | || || ||||| || || ||||||||||||||||| Sbjct 4765427 GATTTGGGGCCTGTTTATGGTTTCCAATGGCGCCACTTTGG 4765387 >seq7 Length=809302 Score = 84.2 bits (92), Expect = 6e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||||||||| | ||| | || ||| || || || || ||||| |||||||| | | Sbjct 313932 GGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGA-CGC 313990 Query 363898 CGGAAA-AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| ||||| || || ||| || || || ||| |||| || || || ||| | Sbjct 313991 GAAAAAGAACACAGGCGTCGAAGAAAACCGAGCGCGAGATTTGTTTTACGCCCTCTGGAT 314050 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 |||| | || ||||||||| | || || | |||||||||| | ||||| || Sbjct 314051 ACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCA 314110 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 ||||||||| || | | ||| | ||||| || || | || ||||||||||||| Sbjct 314111 CGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATACGAAAAGTA 314170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303238993266866