Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
seq4234 84.2 2e-11
seq5 84.2 2e-11
>seq1
Length=3447954
Score = 91.5 bits (100), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 888864 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAG-GACAAAGAAGGCATCCCACCAGA 888919
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 888920 TCAACAGCGGCTTATTTTTGCTGG 888943
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 814492 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAG-GACAAAGAAGGCATCCCACCAGA 814547
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 814548 TCAACAGCGGCTTATTTTTGCTGG 814571
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 839438 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 839493
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 839494 TCAACAGCGGCTTATTTTTGCTGG 839517
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 849629 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAG-GACAAAGAAGGCATCCCACCAGA 849684
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 849685 TCAACAGCGGCTTATTTTTGCTGG 849708
>seq4234
Length=1659
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| ||
Sbjct 992 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 933
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188
||| || ||||||||||||||| ||||
Sbjct 932 TACTTTGTCCGATTACAATATTCAGAAAG 904
>seq5
Length=5663831
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| ||
Sbjct 476852 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 476793
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188
||| || ||||||||||||||| ||||
Sbjct 476792 TACTTTGTCCGATTACAATATTCAGAAAG 476764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433291755227345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |