Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq4234 84.2 2e-11 seq5 84.2 2e-11 >seq1 Length=3447954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 888804 ATGCAAATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 888863 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 888864 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAG-GACAAAGAAGGCATCCCACCAGA 888919 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 888920 TCAACAGCGGCTTATTTTTGCTGG 888943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 814432 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 814491 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 814492 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAG-GACAAAGAAGGCATCCCACCAGA 814547 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 814548 TCAACAGCGGCTTATTTTTGCTGG 814571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 839378 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 839437 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 839438 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCAGA 839493 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 839494 TCAACAGCGGCTTATTTTTGCTGG 839517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/144 (75%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| |||| Sbjct 849569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 849628 Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || | || |||||| | ||| ||||||||||| || ||||| || Sbjct 849629 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAG-GACAAAGAAGGCATCCCACCAGA 849684 Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138 ||||||||| |||||||||| || Sbjct 849685 TCAACAGCGGCTTATTTTTGCTGG 849708 >seq4234 Length=1659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| || Sbjct 992 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 933 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 ||| || ||||||||||||||| |||| Sbjct 932 TACTTTGTCCGATTACAATATTCAGAAAG 904 >seq5 Length=5663831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| || Sbjct 476852 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 476793 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188 ||| || ||||||||||||||| |||| Sbjct 476792 TACTTTGTCCGATTACAATATTCAGAAAG 476764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433291755227345