Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5 205 1e-47
>seq5
Length=5663831
Score = 205 bits (226), Expect = 1e-47
Identities = 267/365 (73%), Gaps = 6/365 (2%)
Strand=Plus/Minus
Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175
||||| || || |||| ||| |||||||| || ||||| || | ||| || || || ||
Sbjct 1930274 TCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTC 1930215
Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235
| ||| || ||||| || || || || ||||| || || ||||| || ||||| || ||
Sbjct 1930214 AACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCG 1930155
Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAAAGCCCAATCG 93292
|| | ||||||| |||||| ||| | | || | | |||||| |||||||| ||
Sbjct 1930154 ACCAAACGTTCG-CAAAATG-GCG-ACTGACGGTCACCGATCCAGCGCAAAGCCCAGTCT 1930098
Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCC 93352
||||||||||| | || || | || ||||| ||||| || || |||| || || ||
Sbjct 1930097 GCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCACGTTCCACC 1930038
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
| ||| || ||||| || ||||| || || |||||||| ||||||||||| || ||
Sbjct 1930037 GGATCACGGATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATG 1929978
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472
||||||||||| || |||||| | | || || || | || | |||||| ||||||| |
Sbjct 1929977 GCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATCGC 1929918
Query 93473 TCTAC 93477
|| ||
Sbjct 1929917 TCCAC 1929913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556813028304120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |