Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 205 1e-47 >seq5 Length=5663831 Score = 205 bits (226), Expect = 1e-47 Identities = 267/365 (73%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| || || |||| ||| |||||||| || ||||| || | ||| || || || || Sbjct 1930274 TCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTC 1930215 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 | ||| || ||||| || || || || ||||| || || ||||| || ||||| || || Sbjct 1930214 AACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCG 1930155 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAAAGCCCAATCG 93292 || | ||||||| |||||| ||| | | || | | |||||| |||||||| || Sbjct 1930154 ACCAAACGTTCG-CAAAATG-GCG-ACTGACGGTCACCGATCCAGCGCAAAGCCCAGTCT 1930098 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCC 93352 ||||||||||| | || || | || ||||| ||||| || || |||| || || || Sbjct 1930097 GCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCACGTTCCACC 1930038 Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 | ||| || ||||| || ||||| || || |||||||| ||||||||||| || || Sbjct 1930037 GGATCACGGATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATG 1929978 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||| | | || || || | || | |||||| ||||||| | Sbjct 1929977 GCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATCGC 1929918 Query 93473 TCTAC 93477 || || Sbjct 1929917 TCCAC 1929913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556813028304120