Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 7e-11 >seq2 Length=11347909 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/224 (69%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTC-----TGT 20591 |||||||| | ||| |||||||| |||||||| |||||||| || || ||| ||| Sbjct 4765387 CCAAAGTGGCGCCATTGGAAACCATAAACAGGCCCCAAATCACCTTC--TTCATAATTGT 4765444 Query 20592 GCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTC 20651 | || || | | | | ||||| || ||||| |||| ||||| || ||||| Sbjct 4765445 AC---AGTCCTCTACTGTCTAGGAATTCTCTGGAAGAATTTCCATCCCAAATGTTGACAT 4765501 Query 20652 CTGTTCT-TGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGC 20710 | |||| |||||||| | | | || || || | | ||||||||||| |||| Sbjct 4765502 -TCTTCTCTGAAAGCTGTTTAGCATTGGTGCTTCCACTGATGAACCAAAGCAGTTCTTCG 4765560 Query 20711 ACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754 || || |||| |||||| || || ||||| || || | ||||| Sbjct 4765561 ACCACTCCTCTCCAAAAGACGCGTTTTGTTGTAAGAAGCGGAAA 4765604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441334935730920