Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq2 82.4 7e-11
>seq2
Length=11347909
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/224 (69%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 20537 CCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTC-----TGT 20591
|||||||| | ||| |||||||| |||||||| |||||||| || || ||| |||
Sbjct 4765387 CCAAAGTGGCGCCATTGGAAACCATAAACAGGCCCCAAATCACCTTC--TTCATAATTGT 4765444
Query 20592 GCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTC 20651
| || || | | | | ||||| || ||||| |||| ||||| || |||||
Sbjct 4765445 AC---AGTCCTCTACTGTCTAGGAATTCTCTGGAAGAATTTCCATCCCAAATGTTGACAT 4765501
Query 20652 CTGTTCT-TGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGC 20710
| |||| |||||||| | | | || || || | | ||||||||||| ||||
Sbjct 4765502 -TCTTCTCTGAAAGCTGTTTAGCATTGGTGCTTCCACTGATGAACCAAAGCAGTTCTTCG 4765560
Query 20711 ACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAA 20754
|| || |||| |||||| || || ||||| || || | |||||
Sbjct 4765561 ACCACTCCTCTCCAAAAGACGCGTTTTGTTGTAAGAAGCGGAAA 4765604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441334935730920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |