Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 9e-21
seq4 96.9 8e-15
>seq1
Length=3447954
Score = 116 bits (128), Expect = 9e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || ||||||||||||||| ||| ||||| ||||||||||| |||||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| ||||| || || || | ||| ||||| || || || || ||||| |||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||||||||||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATT 839045
Score = 111 bits (122), Expect = 4e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || ||||||||||| ||| ||| ||||| ||||||||||| |||||
Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| ||||| || || || | ||| ||||| || || || || ||||| |||
Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||||||||||
Sbjct 814122 AGAGTTTTGACAAATATCTGCATT 814099
Score = 104 bits (114), Expect = 6e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 288333 TCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGC 288392
||| || || |||| ||| |||||| ||| |||||||||||||| || ||||| |
Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629
Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452
|||||| |||||||| | ||| | ||| ||||| | |||||||| || ||||| ||
Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 798569
Query 288453 AGTCTTGACGAATATCTGCATT 288474
|||||| || || || ||||||
Sbjct 798568 AGTCTTAACAAAAATTTGCATT 798547
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | || ||||| || || || || ||||| |||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||||||| ||
Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTTG 849233
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | || ||||| || || || || ||||| |||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||||||| ||
Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTTG 888468
Score = 96.9 bits (106), Expect = 8e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| ||||| ||||||||||| ||||| ||
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| |||||||| | ||| | ||||||||| | ||||| || || ||||| ||
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 840030 GTCTTAACAAAAATTTGCATT 840010
>seq4
Length=12041450
Score = 96.9 bits (106), Expect = 8e-15
Identities = 199/287 (69%), Gaps = 12/287 (4%)
Strand=Plus/Minus
Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426
||||| || || ||| | ||| ||||||||||||||| || || ||| || ||
Sbjct 3767328 CCGAATTGACCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 3767269
Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486
| || | ||||| | |||| ||||||| |||||||| || ||| || |||
Sbjct 3767268 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 3767209
Query 325487 ACGTAACC-GCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AG 325541
||| |||| ||| | ||| || || ||||| || |||| | ||||||||||| |
Sbjct 3767208 ACGGAACCAGCT-AGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAA 3767152
Query 325542 CTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTC 325601
|||| | | ||||| ||||| ||| || || |||||||| | ||| |||||||| |
Sbjct 3767151 GTGAACAAA--ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTAC 3767094
Query 325602 GTTCCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647
| || || | | || ||||||||| | || |||||||||||
Sbjct 3767093 GCTCGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 3767048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179550670408114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |