Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 116 9e-21 seq4 96.9 8e-15 >seq1 Length=3447954 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || ||||||||||||||| ||| ||||| ||||||||||| ||||| Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||| ||||| || || || | ||| ||||| || || || || ||||| ||| Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||||||| Sbjct 839068 AGAGTTTTGACAAATATCTGCATT 839045 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || ||||||||||| ||| ||| ||||| ||||||||||| ||||| Sbjct 814242 TTACCGGCAAAAATCAGACGCTGCTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 814183 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||| ||||| || || || | ||| ||||| || || || || ||||| ||| Sbjct 814182 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 814123 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| |||||||||||| Sbjct 814122 AGAGTTTTGACAAATATCTGCATT 814099 Score = 104 bits (114), Expect = 6e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 288333 TCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGC 288392 ||| || || |||| ||| |||||| ||| |||||||||||||| || ||||| | Sbjct 798688 TCCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCC 798629 Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 |||||| |||||||| | ||| | ||| ||||| | |||||||| || ||||| || Sbjct 798628 TTTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAG 798569 Query 288453 AGTCTTGACGAATATCTGCATT 288474 |||||| || || || |||||| Sbjct 798568 AGTCTTAACAAAAATTTGCATT 798547 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | || ||||| || || || || ||||| ||| Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260 Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||||||| || Sbjct 849259 AGAGTTTTGACAAATATCTGCATTTTG 849233 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || |||||||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||| ||||| || | || | || ||||| || || || || ||||| ||| Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495 Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||||||| || Sbjct 888494 AGAGTTTTGACAAATATCTGCATTTTG 888468 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || |||||||| || ||| ||| ||||| ||||||||||| ||||| || Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| |||||||| | ||| | ||||||||| | ||||| || || ||||| || Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || || |||||| Sbjct 840030 GTCTTAACAAAAATTTGCATT 840010 >seq4 Length=12041450 Score = 96.9 bits (106), Expect = 8e-15 Identities = 199/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 ||||| || || ||| | ||| ||||||||||||||| || || ||| || || Sbjct 3767328 CCGAATTGACCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 3767269 Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486 | || | ||||| | |||| ||||||| |||||||| || ||| || ||| Sbjct 3767268 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 3767209 Query 325487 ACGTAACC-GCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AG 325541 ||| |||| ||| | ||| || || ||||| || |||| | ||||||||||| | Sbjct 3767208 ACGGAACCAGCT-AGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAA 3767152 Query 325542 CTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTC 325601 |||| | | ||||| ||||| ||| || || |||||||| | ||| |||||||| | Sbjct 3767151 GTGAACAAA--ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTAC 3767094 Query 325602 GTTCCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647 | || || | | || ||||||||| | || ||||||||||| Sbjct 3767093 GCTCGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 3767048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179550670408114