Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq4 102 2e-16
>seq4
Length=12041450
Score = 102 bits (112), Expect = 2e-16
Identities = 231/338 (68%), Gaps = 12/338 (4%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
|| ||||| |||| |||||| || ||| | || || | | || | ||||| ||
Sbjct 3767379 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 3767320
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| ||| | ||| ||||||||||||||| || || ||| || || | || |
Sbjct 3767319 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 3767260
Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC- 297615
||||| | |||| ||||||| |||||||| || ||| || |||||| ||||
Sbjct 3767259 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 3767200
Query 297616 GCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATA 297671
||| | ||| || || ||||| || |||| | ||||||||||| | |||| | |
Sbjct 3767199 GCT-AGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAGTGAACAAA 3767143
Query 297672 TCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT 297731
||||| ||||| ||| || || |||||||| | ||| |||||||| || || ||
Sbjct 3767142 --ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTAT 3767085
Query 297732 -CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768
| | || ||||||||| | || |||||||||||
Sbjct 3767084 CCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 3767048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102783021349050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |