Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4 102 2e-16 >seq4 Length=12041450 Score = 102 bits (112), Expect = 2e-16 Identities = 231/338 (68%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | ||||| || Sbjct 3767379 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 3767320 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||| | ||| ||||||||||||||| || || ||| || || | || | Sbjct 3767319 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 3767260 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACC- 297615 ||||| | |||| ||||||| |||||||| || ||| || |||||| |||| Sbjct 3767259 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 3767200 Query 297616 GCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATA 297671 ||| | ||| || || ||||| || |||| | ||||||||||| | |||| | | Sbjct 3767199 GCT-AGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAGTGAACAAA 3767143 Query 297672 TCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT 297731 ||||| ||||| ||| || || |||||||| | ||| |||||||| || || || Sbjct 3767142 --ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTAT 3767085 Query 297732 -CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | | || ||||||||| | || ||||||||||| Sbjct 3767084 CCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 3767048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102783021349050