Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq7 111 2e-19
seq1 87.8 2e-12
>seq7
Length=809302
Score = 111 bits (122), Expect = 2e-19
Identities = 177/254 (70%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223
||| ||||||| |||| || | |||||| |||||| | ||||| || || ||||||
Sbjct 315004 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 314945
Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283
||||| ||||| | || |||| ||| || || | | |||| | ||| || ||
Sbjct 314944 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 314885
Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343
| |||||||||| ||||||||| ||||||||| ||||| || | |||||| ||||
Sbjct 314884 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 314825
Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403
| || || |||| | | |||| || ||| |||| ||| || | | ||||||
Sbjct 314824 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATGAAAGCA 314765
Query 154404 TCGGCGAGCCCTTG 154417
|| || | |||||
Sbjct 314764 TCCGCCAATCCTTG 314751
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873
|||||| | |||||||||||| | ||| |||| ||| || ||||| || ||
Sbjct 314165 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGG 314106
Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933
||||||| |||||| | ||| || | ||| ||||| || | ||| || | |||
Sbjct 314105 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 314046
Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993
| ||||| |||||||| ||||| || ||||| |||| || ||| ||| |
Sbjct 314045 GAGGGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 313987
Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047
||| ||||||| ||||||| |||||||| || || ||||| || || | ||| ||
Sbjct 313986 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 313932
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685
||||| |||||||||| ||||| || ||| || || ||||| |||| |||||||
Sbjct 314408 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 314349
Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745
||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| |
Sbjct 314348 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCGGTTTCAATTTGAGAC 314289
Query 154746 TCAATAATTG 154755
||||||||||
Sbjct 314288 TCAATAATTG 314279
>seq1
Length=3447954
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| |||||||||||||| ||||| ||||| || ||
Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| || |||||| | |||||||| | || | ||| || || || |
Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 793328
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 793327 GTCTTAACAAAAATTTGCATT 793307
Score = 86.0 bits (94), Expect = 6e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| | || | || || || || || ||||||||||| || || ||||||||
Sbjct 793163 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 793104
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
||||||| ||| | ||||||| | |||||||| | || | || ||||||||
Sbjct 793103 GCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGT 793044
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || || ||||||||||||
Sbjct 793043 AAGAGTCTTAACAAAAATTTGCATT 793019
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| | || || || || || ||||||||||| || || |||||||| |
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | || | || |||||||| | |
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 786670 GTCTTAACAAAAATTTGCATT 786650
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| | || || || || || ||||||||||| || || |||||||| |
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | |||||||| | || | || |||||||| |
Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 787238 GTCTTAACAAAAATTTGCATT 787218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499601936721720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |