Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7 111 2e-19 seq1 87.8 2e-12 >seq7 Length=809302 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 ||| ||||||| |||| || | |||||| |||||| | ||||| || || |||||| Sbjct 315004 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 314945 Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283 ||||| ||||| | || |||| ||| || || | | |||| | ||| || || Sbjct 314944 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCA 314885 Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343 | |||||||||| ||||||||| ||||||||| ||||| || | |||||| |||| Sbjct 314884 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 314825 Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403 | || || |||| | | |||| || ||| |||| ||| || | | |||||| Sbjct 314824 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATGAAAGCA 314765 Query 154404 TCGGCGAGCCCTTG 154417 || || | ||||| Sbjct 314764 TCCGCCAATCCTTG 314751 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873 |||||| | |||||||||||| | ||| |||| ||| || ||||| || || Sbjct 314165 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCGTGAGG 314106 Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933 ||||||| |||||| | ||| || | ||| ||||| || | ||| || | ||| Sbjct 314105 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 314046 Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993 | ||||| |||||||| ||||| || ||||| |||| || ||| ||| | Sbjct 314045 GAGGGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 313987 Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047 ||| ||||||| ||||||| |||||||| || || ||||| || || | ||| || Sbjct 313986 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 313932 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 ||||| |||||||||| ||||| || ||| || || ||||| |||| ||||||| Sbjct 314408 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 314349 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 ||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| | Sbjct 314348 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCGGTTTCAATTTGAGAC 314289 Query 154746 TCAATAATTG 154755 |||||||||| Sbjct 314288 TCAATAATTG 314279 >seq1 Length=3447954 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| |||||||||||||| ||||| ||||| || || Sbjct 793447 CCAGCAAAAATCAGACGTTGCTGATCGGGAGGAATTCCCTCTTTATCTTGAATCTTCCCT 793388 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| || |||||| | |||||||| | || | ||| || || || | Sbjct 793387 TTTACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 793328 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 793327 GTCTTAACAAAAATTTGCATT 793307 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| | || | || || || || || ||||||||||| || || |||||||| Sbjct 793163 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 793104 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||||| ||| | ||||||| | |||||||| | || | || |||||||| Sbjct 793103 GCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGT 793044 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || || |||||||||||| Sbjct 793043 AAGAGTCTTAACAAAAATTTGCATT 793019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| | || || || || || ||||||||||| || || |||||||| | Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||| | || | || |||||||| | | Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 786670 GTCTTAACAAAAATTTGCATT 786650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| | || || || || || ||||||||||| || || |||||||| | Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | |||||||| | || | || |||||||| | Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 787238 GTCTTAACAAAAATTTGCATT 787218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601936721720