Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 6e-12 >seq5 Length=5663831 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364 ||| | || ||| ||||| | | |||||||| ||||| || | ||||| || Sbjct 1930054 CTGTTCAACGCGATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGC 1930113 Query 52365 TGGATCGA-GAGCGACAC-CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCG 52422 ||||||| || || || ||||| || ||| || |||| || ||||| || | Sbjct 1930114 TGGATCGGTGACCGTCAGTCGCCATTTTG--CGAACGTTTGGTCGCGTTCGCAGCTGTTG 1930171 Query 52423 AGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAA 52482 | ||| | || |||||||||||||| || | || || | | |||| | ||| | | Sbjct 1930172 AAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGA 1930231 Query 52483 TGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGA 52525 ||||||| ||||||||||||||||| |||| || || ||||| Sbjct 1930232 TGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGA 1930274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496219826889360