Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1 107 1e-18 seq5152 84.2 2e-11 >seq1 Length=3447954 Score = 107 bits (118), Expect = 1e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||| || ||||| |||||||||| ||||| || ||||||||||||||| || Sbjct 793168 AATTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 793109 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||||| |||||| | ||||| ||||| ||| || || ||||| || ||||| Sbjct 793108 ATTTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTG 793049 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || |||||||||||||| Sbjct 793048 CCGGTAAGAGTCTTAACAAAAATTTGCAT 793020 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| ||||| || |||||||||||| || || |||||||| | Sbjct 798687 CCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 798628 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| ||||||| ||||| ||| || || ||||| || ||||| || || ||| Sbjct 798627 TTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 798568 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 798567 GTCTTAACAAAAATTTGCAT 798548 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 ||| || || ||||| | |||||||||||||| || ||||||||| || || || Sbjct 889586 TAACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 889527 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||||| ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 889526 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 889467 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 889466 TCCAGTAAGGGTCTTAACAAAAATTTGCAT 889437 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| ||||| || |||||||||||||| || ||||||| Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 786670 GTCTTAACAAAAATTTGCAT 786651 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| ||||| || ||||||||| || || || ||||||| Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||| ||| ||||||| ||||| |||||| || ||||| || ||||| || || Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||||||||| Sbjct 786963 AGGGTCTTAACAAAAATTTGCAT 786941 Score = 98.7 bits (108), Expect = 7e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || || ||||| | |||||||| ||||| || ||||||||| || || || | Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||||| ||| ||| ||||||| ||||| |||||| || || || || ||||| Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCAT 850202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||||||| ||||| || |||||||||||||| || ||||||| Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| | ||||| ||||| ||| || || ||||| || ||||| || || || Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 787238 GTCTTAACAAAAATTTGCAT 787219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| ||||| || ||||||||||||||| || ||||| | | Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| || ||||| ||| || || ||||| || ||||| || || ||| Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 816426 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 816425 GTCTTAACAAAAATTTGCAT 816406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | |||| ||| || || || ||||||||| || || || ||||||| | Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| ||||||| ||||| |||||| || ||||| |||||||| || || || Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || |||||||||||||| Sbjct 840030 GTCTTAACAAAAATTTGCAT 840011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||||||||| ||| ||||||||| || || || |||||| Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||| ||| |||| || | || ||| || || | ||||||||||| || ||| Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| ||||| || ||||| || Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||| ||||| ||| ||||||||| || || || |||||| Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || || || || | ||||||||||| || ||| Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 |||||||| ||||| || ||||| |||| || |||| Sbjct 849259 AGAGTTTTGACAAATATCTGCAT-TTTGCGATGAATT 849224 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| ||| ||||| ||| ||||||||| || || || |||||| Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || || || || | ||||||||||| || ||| Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 |||||||| ||||| || ||||| |||| || |||| Sbjct 888494 AGAGTTTTGACAAATATCTGCAT-TTTGCGATGAATT 888459 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111 |||||||| || ||| || ||||| ||||| ||| |||||||||||| |||| || Sbjct 888928 CGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTTTTTACATTTTCAATT 888869 Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171 ||||| || || || | ||||| ||||| ||||||| ||||| ||||| ||| Sbjct 888868 GTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAACGTTTTCACAAATATT 888809 Query 15172 TGCAT 15176 ||||| Sbjct 888808 TGCAT 888804 >seq5152 Length=332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||||||| ||||| || ||||||||| || || || ||||||| Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | ||| ||| ||||||| ||||| |||||| || ||||| || |||| || || Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATC-TTTTGCC-GTG 304 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || |||||||||||||| Sbjct 305 AAGGTCTTAACAAAAATTTGCAT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357362106727955