Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 1e-18
seq5152 84.2 2e-11
>seq1
Length=3447954
Score = 107 bits (118), Expect = 1e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|||| || ||||| |||||||||| ||||| || ||||||||||||||| ||
Sbjct 793168 AATTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGT 793109
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||||| |||||| | ||||| ||||| ||| || || ||||| || |||||
Sbjct 793108 ATTTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTG 793049
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||||||||||||
Sbjct 793048 CCGGTAAGAGTCTTAACAAAAATTTGCAT 793020
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || |||||||||||| || || |||||||| |
Sbjct 798687 CCAGCTAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 798628
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| ||||||| ||||| ||| || || ||||| || ||||| || || |||
Sbjct 798627 TTCACATTTTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 798568
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 798567 GTCTTAACAAAAATTTGCAT 798548
Score = 104 bits (114), Expect = 2e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
||| || || ||||| | |||||||||||||| || ||||||||| || || ||
Sbjct 889586 TAACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 889527
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||||| ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 889526 AATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTT 889467
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||||||||||||
Sbjct 889466 TCCAGTAAGGGTCTTAACAAAAATTTGCAT 889437
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || |||||||||||||| || |||||||
Sbjct 786790 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 786731
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 786730 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGA 786671
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 786670 GTCTTAACAAAAATTTGCAT 786651
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||||||| ||||| || ||||||||| || || || |||||||
Sbjct 787083 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 787024
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||| ||| ||||||| ||||| |||||| || ||||| || ||||| || ||
Sbjct 787023 CCTTTCACATTTTCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTG 786964
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||||||||||||
Sbjct 786963 AGGGTCTTAACAAAAATTTGCAT 786941
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
|| || || ||||| | |||||||| ||||| || ||||||||| || || || |
Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||||| ||| ||| ||||||| ||||| |||||| || || || || |||||
Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||||||||||||
Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCAT 850202
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || |||||||||||||| || |||||||
Sbjct 787358 CCAGCAAAAATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCC 787299
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| ||| || || ||||| || ||||| || || ||
Sbjct 787298 TTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGG 787239
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 787238 GTCTTAACAAAAATTTGCAT 787219
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| ||||| || ||||||||||||||| || ||||| | |
Sbjct 816545 CCAGCAAAAATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 816486
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| || ||||| ||| || || ||||| || ||||| || || |||
Sbjct 816485 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGA 816426
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 816425 GTCTTAACAAAAATTTGCAT 816406
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||| || || || ||||||| |
Sbjct 840150 CCAGCAAAAATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 840091
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| ||||||| ||||| |||||| || ||||| |||||||| || || ||
Sbjct 840090 TTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGG 840031
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 840030 GTCTTAACAAAAATTTGCAT 840011
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||||||||| ||| ||||||||| || || || ||||||
Sbjct 839188 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 839129
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||| ||| |||| || | || ||| || || | ||||||||||| || |||
Sbjct 839128 CCTTTCACATTTTCAATTGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 839069
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|||||||| ||||| || ||||| ||
Sbjct 839068 AGAGTTTTGACAAATATCTGCATTTT 839043
Score = 82.4 bits (90), Expect = 5e-11
Identities = 113/157 (72%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 849379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 849320
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || || || || | ||||||||||| || |||
Sbjct 849319 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 849260
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190
|||||||| ||||| || ||||| |||| || ||||
Sbjct 849259 AGAGTTTTGACAAATATCTGCAT-TTTGCGATGAATT 849224
Score = 82.4 bits (90), Expect = 5e-11
Identities = 113/157 (72%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 888614 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 888555
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || || || || | ||||||||||| || |||
Sbjct 888554 CCCTTCACATTTTCAATTGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 888495
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190
|||||||| ||||| || ||||| |||| || ||||
Sbjct 888494 AGAGTTTTGACAAATATCTGCAT-TTTGCGATGAATT 888459
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 15052 CGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATA 15111
|||||||| || ||| || ||||| ||||| ||| |||||||||||| |||| ||
Sbjct 888928 CGCTGTTGATCTGGTGGGATGCCTTCTTTGTCCTGAATCTTGCTTTTTACATTTTCAATT 888869
Query 15112 GTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATT 15171
||||| || || || | ||||| ||||| ||||||| ||||| ||||| |||
Sbjct 888868 GTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAACGTTTTCACAAATATT 888809
Query 15172 TGCAT 15176
|||||
Sbjct 888808 TGCAT 888804
>seq5152
Length=332
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||||||| ||||| || ||||||||| || || || |||||||
Sbjct 187 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 246
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||| ||| ||||||| ||||| |||||| || ||||| || |||| || ||
Sbjct 247 CCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATC-TTTTGCC-GTG 304
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| || || ||||||||||||||
Sbjct 305 AAGGTCTTAACAAAAATTTGCAT 327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357362106727955
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