Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq4763 102 7e-17 seq3435 102 7e-17 seq3072 102 7e-17 >seq1 Length=3447954 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || ||||| ||||| |||||||||||||||||||| ||| | | Sbjct 798678 ATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTCACATTT 798619 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 798618 TCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 798559 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 798558 AAAATTTGCAT 798548 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| | | Sbjct 787071 ATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACATTT 787012 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| ||| || || | || ||||| | || | |||||||||||| || || || ||| Sbjct 787011 TCTATGGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGGGTCTTAACA 786952 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 786951 AAAATTTGCAT 786941 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || |||||||||||||| ||||||||||| ||| | Sbjct 864121 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTACTTTTCACGT 864062 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 864061 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 864002 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 864001 CAAAAATCTGCATACCGCCAC 863981 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || ||||||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 793169 CAATTACTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTG 793110 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| || | |||| || || || | || ||||| | || | |||||| Sbjct 793109 TATTTTGCCCTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTT 793050 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || |||||||||||||| Sbjct 793049 GCCGGTAAGAGTCTTAACAAAAATTTGCAT 793020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | ||||| ||||| || ||||| ||||| || |||||||||||| Sbjct 850350 AACTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 850291 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | ||||| || || || | || ||||| | ||| | ||||| Sbjct 850290 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 850231 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||||||||| Sbjct 850230 CCAGTAAGGGTCTTAACAAAAATTTGCAT 850202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || || |||||||| ||||| ||||| || ||||| || | Sbjct 786781 ATCAAACGTTGTTGATCTGGCGGAATTCCTTCCTTATCCTGTATTTTGCCCTTTACATTC 786722 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 786721 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTGAGAGTCTTAACA 786662 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 786661 AAAATTTGCAT 786651 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| ||||| || ||||| ||||| ||||| ||||| || ||||| ||| | | Sbjct 816536 ATCAGACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCTTTCACATTT 816477 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | || || || | || ||||| | || | |||||||||||| ||||| || ||| Sbjct 816476 TCAATTGTATCAGATGGTTCCACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACA 816417 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 816416 AAAATTTGCAT 816406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| |||||||| ||||| ||||| || |||||||| || ||||| ||| | | Sbjct 840141 ATCAGACGTTGCTGATCCGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTCACATTT 840082 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | || | ||||||||||| || || || ||| Sbjct 840081 TCTATTGTATCAGATGGTTCTACTTCCAAGGTGATGGTTTTGCCGGTGAGGGTCTTAACA 840022 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 840021 AAAATTTGCAT 840011 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || || | ||||| || || || ||||| ||||| || |||||||||||| Sbjct 889585 AACTGCTTACCAGCAAAAATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCTTGA 889526 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | ||||| || || || | || ||||| | ||| | ||||| Sbjct 889525 ATTTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTT 889466 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||||||||| Sbjct 889465 CCAGTAAGGGTCTTAACAAAAATTTGCAT 889437 >seq4763 Length=1852 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || || |||||||||||||| ||||||||||| ||| | Sbjct 1629 ATATCAATCGTTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTACTTTTCACGT 1688 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | ||||| |||| ||| || || | || | ||||| || |||| ||||| | Sbjct 1689 TTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 1748 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 1749 CAAAAATCTGCATTCCGCCAC 1769 >seq3435 Length=827 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| ||| | Sbjct 453 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 512 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | ||||| |||| ||| || || | || | ||||| || |||| ||||| | Sbjct 513 TTTCAATCGTGTCTGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 572 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 | ||||| ||||| ||| || Sbjct 573 CGAAAATCTGCATTCCGCCAC 593 >seq3072 Length=446 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| ||| | Sbjct 228 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 169 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 168 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 109 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 108 CAAAAATCTGCATACCGCCAC 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451964423775480