Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq5 181 1e-40
>seq5
Length=5663831
Score = 181 bits (200), Expect = 1e-40
Identities = 272/379 (72%), Gaps = 22/379 (6%)
Strand=Plus/Minus
Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973
|| ||||||| | || || || ||||||||||| ||||| |||||||| |||||||| |
Sbjct 1930279 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCT 1930220
Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033
|||| | ||| || || | ||||| ||||| |||||||| | ||| || || || ||||
Sbjct 1930219 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGA 1930160
Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG----CGATCCAGCGCAGCGCC 133089
| || |||| || |||| || |||| | || || |||||||||||| |||
Sbjct 1930159 ACGCGACCAAACGTTCGC--AAAATGGCGAC--TGACGGTCACCGATCCAGCGCAAAGCC 1930104
Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149
|| || || |||| || |||||||| || || ||||| ||||| |||| || ||
Sbjct 1930103 CAGTCTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACA----GAAAATC 1930048
Query 133150 TC-TTCC-GAGGA--ACGCACGTAGGTGTCGAT---GAGGGTCGAATACATTTCCGAGTG 133202
| |||| ||| ||| | |||||||||||| |||| | |||||||| || ||
Sbjct 1930047 ACGTTCCACCGGATCACGGATGTAGGTGTCGATCAAGAGGCT---GTACATTTCGGAATG 1929991
Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262
|| || || ||||| ||||| ||||| || || | || |||||| || || | |||
Sbjct 1929990 GACATTTTCTATGGCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTC 1929931
Query 133263 TTGAGCGAAACGCTCGACC 133281
||| | || ||||| |||
Sbjct 1929930 TTGCGAAAATCGCTCCACC 1929912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500129891425920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |