Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 181 1e-40 >seq5 Length=5663831 Score = 181 bits (200), Expect = 1e-40 Identities = 272/379 (72%), Gaps = 22/379 (6%) Strand=Plus/Minus Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973 || ||||||| | || || || ||||||||||| ||||| |||||||| |||||||| | Sbjct 1930279 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCT 1930220 Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 |||| | ||| || || | ||||| ||||| |||||||| | ||| || || || |||| Sbjct 1930219 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGA 1930160 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG----CGATCCAGCGCAGCGCC 133089 | || |||| || |||| || |||| | || || |||||||||||| ||| Sbjct 1930159 ACGCGACCAAACGTTCGC--AAAATGGCGAC--TGACGGTCACCGATCCAGCGCAAAGCC 1930104 Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149 || || || |||| || |||||||| || || ||||| ||||| |||| || || Sbjct 1930103 CAGTCTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACA----GAAAATC 1930048 Query 133150 TC-TTCC-GAGGA--ACGCACGTAGGTGTCGAT---GAGGGTCGAATACATTTCCGAGTG 133202 | |||| ||| ||| | |||||||||||| |||| | |||||||| || || Sbjct 1930047 ACGTTCCACCGGATCACGGATGTAGGTGTCGATCAAGAGGCT---GTACATTTCGGAATG 1929991 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 || || || ||||| ||||| ||||| || || | || |||||| || || | ||| Sbjct 1929990 GACATTTTCTATGGCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTC 1929931 Query 133263 TTGAGCGAAACGCTCGACC 133281 ||| | || ||||| ||| Sbjct 1929930 TTGCGAAAATCGCTCCACC 1929912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129891425920