Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4 336 2e-86 seq2 122 7e-22 >seq4 Length=12041450 Score = 336 bits (372), Expect = 2e-86 Identities = 495/701 (71%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 10498239 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 10498180 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 | | |||| |||||||| | | ||||| || |||||| || |||||||| | | Sbjct 10498179 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 10498120 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | | ||| ||||||| ||||| |||| |||| Sbjct 10498119 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 10498060 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || || || | ||||||||| | ||||| ||| |||| || |||| Sbjct 10498059 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 10498000 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| |||||||| | | Sbjct 10497999 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 10497940 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 10497939 CAGTTTTTCCCAAATAAGCCTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 10497880 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| |||||| | | || ||| || || || ||| |||| || | ||||| Sbjct 10497879 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 10497820 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 ||| | || |||||||| |||||||| | ||||||||| || || || |||| Sbjct 10497819 ATCCATCGTTGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 10497760 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 ||| | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 10497759 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 10497700 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 |||||| ||| || |||||||||||||| | || || || || || | |||||| || Sbjct 10497699 CTTGATTTTTTGCCGCATCTCCAATCAGTCGCTCGGTATCGGTGAAAGCAACATAACTTG 10497640 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || || ||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 10497639 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 10497580 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 10497579 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 10497539 Score = 114 bits (126), Expect = 1e-19 Identities = 196/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| ||| Sbjct 10498708 ATACCTGCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCA 10498649 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 || ||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 10498648 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 10498590 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 10498589 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 10498530 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | | |||||||| |||||| |||| ||| Sbjct 10498529 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 10498470 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | ||||| |||||| Sbjct 10498469 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 10498428 Score = 111 bits (122), Expect = 1e-18 Identities = 125/167 (75%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 2510171 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 2510112 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 |||||| | | | || ||||||||||||| ||| || || | |||||||| ||| Sbjct 2510111 GTAACTCCTATTCAGCTCTGTGATAAGTATTATGAATTGCATCGCGATGTTTATGAATGG 2510052 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493 |||||||| |||||||| ||||||| | | | ||||||||||| Sbjct 2510051 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 2510008 >seq2 Length=11347909 Score = 122 bits (134), Expect = 7e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || |||| | |||||||||||||||||| | ||||||||||| || ||| Sbjct 3746029 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 3746088 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||| | |||||| ||||| || ||||| || | || |||| | |||||||| Sbjct 3746089 TGACGTTGCGCATCGTTGAAATAAGCGGGAACCGTGACGACAGCATTTTTCACTTCTTTG 3746148 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 3746149 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATAGCTGAAATTTCTTCG 3746208 Query 518381 GG 518382 || Sbjct 3746209 GG 3746210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780481835333278