Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 237 2e-57 seq2 134 2e-26 >seq4 Length=12041450 Score = 237 bits (262), Expect = 2e-57 Identities = 509/754 (68%), Gaps = 10/754 (1%) Strand=Plus/Minus Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 ||||| ||||| || || ||||| || || || || ||||| | || || || ||| Sbjct 10498345 AACGTGCGCTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 10498286 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || || ||||| | || || |||||||| | ||| || | | | Sbjct 10498285 GACATGTCCTTCTTGTTCTTGCGCTTAAACTCAGCCACGAAATGATTTACCATGCGATTG 10498226 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||||||||| || || || || ||||| | ||||| ||||| || || Sbjct 10498225 TCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 10498166 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 |||| ||| | || | || |||||||| ||||||||||| |||||||| || || || Sbjct 10498165 TCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAATATCAGAACA 10498106 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||||| || || | || |||| || || || || || || ||||| |||||||| Sbjct 10498105 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 10498047 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || ||||| || ||| |||| |||| ||| ||| | || ||||| ||||| || | Sbjct 10498046 GTTGATGATACGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 10497988 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || ||||||||||| || ||||| || || | || || ||| | || | || || | Sbjct 10497987 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAACAGTTTTTCCCA 10497928 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 ||| | || || | || ||||| || | ||||| | || ||||| | | Sbjct 10497927 AATAAGCCTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGATTTCTTCTGGTG 10497868 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 ||| |||| || || || | || |||| ||| | ||||| || || || Sbjct 10497867 TAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGATCCATCGT 10497811 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 |||||| || | | ||||| ||||||||| || ||| || ||| | Sbjct 10497810 TGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCATCAAATCGAC 10497751 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || ||||| |||||||||||||| || | || |||| || ||| || | Sbjct 10497750 GACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACTTGATTTT 10497691 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | ||||| || || || || || || || || || || || || || ||| || | Sbjct 10497690 TTGCCGCATCTCCAATCAGTCGCTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTGG 10497634 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 | ||||||||||| ||||| ||||||||||| || Sbjct 10497633 TACGATTCCCTTGATCGTTGGCAATAATTTCAAC 10497600 Score = 122 bits (134), Expect = 1e-22 Identities = 195/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || || || || || || |||| || |||||||| || |||||| Sbjct 10498702 GCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCATTAAAA 10498643 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| |||| | |||| ||| || || || || |||||||| |||||||| | | Sbjct 10498642 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAAAACAACT 10498583 Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||||| | ||| || | || | || ||||| | |||||| || |||||| Sbjct 10498582 TCATGAATCACT---GCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 10498526 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | |||||||||||| | || || || || || || | ||||| | || Sbjct 10498525 AAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGTG 10498466 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 |||||||||| ||| ||||| | ||||||||||||| Sbjct 10498465 TAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAATG 10498427 >seq2 Length=11347909 Score = 134 bits (148), Expect = 2e-26 Identities = 309/462 (67%), Gaps = 5/462 (1%) Strand=Plus/Plus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || || || |||| | || || |||||||| || | |||||||| || ||| Sbjct 3746029 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 3746088 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || ||||||| |||||| || || || || ||||| ||||| || | | |||| || Sbjct 3746089 TGACGTTGCGCATCGTTGAAATAAGCGGGAACCGTGACGACAGCATTTTTCACTTCTTTG 3746148 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || | ||| | ||| || || ||||||||||| | |||||| | |||||| ||||| Sbjct 3746149 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATAGCTGAAATTTCTTCG 3746208 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | ||| |||| |||||||| ||| | || | || | ||||| || Sbjct 3746209 GGAGTGAACAATTTCTTTTCACCGCTAACAGTAAGCTGAACGTTCGGTTTGCTCGATTTT 3746268 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGAAAA 7929 | | ||| | | | ||| ||| ||| |||| | || || ||||| | Sbjct 3746269 TC---AACTACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-ATCCGACCA 3746324 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 | || |||| | ||||||||| || || || || || | || || ||| || Sbjct 3746325 TTCTCGACCGACCATACGCTTTGCGTCGAATACCGTATTCTCAGGATTGGTGGTCAACTG 3746384 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 || ||||| ||||| ||||| ||||| || | |||||| || || ||||| || Sbjct 3746385 ATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACGG 3746444 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| ||||||| || || || || ||||||||||| || || Sbjct 3746445 GGTGATTCGATTGCCCTGATCATTGGCAATAATTTCAACACG 3746486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635078313544920