Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq4 237 2e-57
seq2 134 2e-26
>seq4
Length=12041450
Score = 237 bits (262), Expect = 2e-57
Identities = 509/754 (68%), Gaps = 10/754 (1%)
Strand=Plus/Minus
Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396
||||| ||||| || || ||||| || || || || ||||| | || || || |||
Sbjct 10498345 AACGTGCGCTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 10498286
Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456
|| || || ||||| | || || |||||||| | ||| || | | |
Sbjct 10498285 GACATGTCCTTCTTGTTCTTGCGCTTAAACTCAGCCACGAAATGATTTACCATGCGATTG 10498226
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || ||||||||||| || || || || ||||| | ||||| ||||| || ||
Sbjct 10498225 TCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 10498166
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575
|||| ||| | || | || |||||||| ||||||||||| |||||||| || || ||
Sbjct 10498165 TCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAATATCAGAACA 10498106
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
||||| || || | || |||| || || || || || || ||||| ||||||||
Sbjct 10498105 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 10498047
Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
|| || ||||| || ||| |||| |||| ||| ||| | || ||||| ||||| || |
Sbjct 10498046 GTTGATGATACGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 10497988
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || ||||||||||| || ||||| || || | || || ||| | || | || || |
Sbjct 10497987 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAACAGTTTTTCCCA 10497928
Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814
||| | || || | || ||||| || | ||||| | || ||||| | |
Sbjct 10497927 AATAAGCCTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGATTTCTTCTGGTG 10497868
Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874
||| |||| || || || | || |||| ||| | ||||| || || ||
Sbjct 10497867 TAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGATCCATCGT 10497811
Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934
|||||| || | | ||||| ||||||||| || ||| || ||| |
Sbjct 10497810 TGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCATCAAATCGAC 10497751
Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994
||||| || ||||| |||||||||||||| || | || |||| || ||| || |
Sbjct 10497750 GACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACTTGATTTT 10497691
Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054
| ||||| || || || || || || || || || || || || || ||| || |
Sbjct 10497690 TTGCCGCATCTCCAATCAGTCGCTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTGG 10497634
Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088
| ||||||||||| ||||| ||||||||||| ||
Sbjct 10497633 TACGATTCCCTTGATCGTTGGCAATAATTTCAAC 10497600
Score = 122 bits (134), Expect = 1e-22
Identities = 195/279 (70%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| || || || || || || || || || || |||| || |||||||| || ||||||
Sbjct 10498702 GCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCATTAAAA 10498643
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
|||| |||| | |||| ||| || || || || |||||||| |||||||| | |
Sbjct 10498642 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAAAACAACT 10498583
Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216
|||| ||||| | ||| || | || | || ||||| | |||||| || ||||||
Sbjct 10498582 TCATGAATCACT---GCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 10498526
Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276
| | |||||||||||| | || || || || || || | ||||| | ||
Sbjct 10498525 AAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGTG 10498466
Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315
|||||||||| ||| ||||| | |||||||||||||
Sbjct 10498465 TAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAATG 10498427
>seq2
Length=11347909
Score = 134 bits (148), Expect = 2e-26
Identities = 309/462 (67%), Gaps = 5/462 (1%)
Strand=Plus/Plus
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
||||| || || || |||| | || || |||||||| || | |||||||| || |||
Sbjct 3746029 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCTGCATCTTTGGTAGCT 3746088
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|| ||||||| |||||| || || || || ||||| ||||| || | | |||| ||
Sbjct 3746089 TGACGTTGCGCATCGTTGAAATAAGCGGGAACCGTGACGACAGCATTTTTCACTTCTTTG 3746148
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810
|| | ||| | ||| || || ||||||||||| | |||||| | |||||| |||||
Sbjct 3746149 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATAGCTGAAATTTCTTCG 3746208
Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870
| | ||| |||| |||||||| ||| | || | || | ||||| ||
Sbjct 3746209 GGAGTGAACAATTTCTTTTCACCGCTAACAGTAAGCTGAACGTTCGGTTTGCTCGATTTT 3746268
Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGAAAA 7929
| | ||| | | | ||| ||| ||| |||| | || || ||||| |
Sbjct 3746269 TC---AACTACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-ATCCGACCA 3746324
Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989
| || |||| | ||||||||| || || || || || | || || ||| ||
Sbjct 3746325 TTCTCGACCGACCATACGCTTTGCGTCGAATACCGTATTCTCAGGATTGGTGGTCAACTG 3746384
Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049
|| ||||| ||||| ||||| ||||| || | |||||| || || ||||| ||
Sbjct 3746385 ATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACGG 3746444
Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091
||| ||||||| || || || || ||||||||||| || ||
Sbjct 3746445 GGTGATTCGATTGCCCTGATCATTGGCAATAATTTCAACACG 3746486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635078313544920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |